BAC Information

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BAC

Clone NameMSMg01-362J17
Chromosome9 (Build37)
Map Location 106,093,857 - 106,269,412
singlet/doubletdoublet
Overlap geneWdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a
Upstream geneNek11, Aste1, Atp2c1, EG434434, LOC664981, Pik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik
Downstream geneDusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362J17.T7 (MSMg01no362_j17.b1)MSMg01-362J17.TJ (MSMg01no362_j17.g1)
ACCAG471252AG471253
length741739
length of high quality
(start - end)
538 (48 - 585)578 (79 - 656)
definitionCHROMAT_FILE: MSMg01no362_j17.b1 PHD_FILE: MSMg01no362_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:02 2005CHROMAT_FILE: MSMg01no362_j17.g1 PHD_FILE: MSMg01no362_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:02 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(106,093,857 - 106,094,391)(106,268,859 - 106,269,412)
sequence
TTCTCAAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAGGATTGCTGCTTCCTTGACTGAATCAGAATAGGTGAAGACC
TTGACCTTGACCTTTGGAAGAAAATATTCTGGCTTGGGTTTAGTTGACTA
TGTTGGCTCTCCAGCTCAGACTGCTCTAAGAATGAAAGCCCTCAAAGCCT
GGTGGGATGTGCAACAAGTTGGATCTGCGGCTGAAAGTTATAACCATACA
AACATGGCCTGAGTCCAGTCCCCAGATCCCGTGGTAAAAGGAGAAAACCT
ACTTTCTGAAAGTTGTCCTTAGGTTTCCACACATGCCATGGCATTTGCAA
CAGAGTCACAAATTATAAAGTGGAATACTGCCTGGCAGCAGCTACTGCGT
TTCCAGGCTTTCCAATGCAGAATGCTCCCACCCCCACCAGTTCTACCTAC
ACATTGGATCTGTAGAGCTCCATTGTCCCCCCAGATCCTCCAAATGCCTC
CAACCCTGCTGGTGCCTTATTGTCACCAAGTGCCTCCAGGCTCCCTAATG
CCTCATTATCTTCAAATACCACAAATCCTCCCATTACTTGAAGGTCTACA
AATGTCTCCAGGATCCCCAGTGAACCCAGGCTTTTAGGTTTGTCCCCGTC
TCTCAGCTCCACTTGTGGGTCCTCAGGTCCTTCTTAGGATCCAAGTTTCT
CCCCCGGGTTTCCATCCTAGTTGATATGTTGTGTTCTTTAN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTGTAGCCTAGGCTGGCCT
GGGTGCCTCTGCCTCCCAAGTGTTAGGATTAAAGGTGTGCACCATCACCT
CTCGGCTTCTTTTAAATTTTTTAAAAAGATTGAAGTGTTTTCTCTATTTG
AATGTCCATGGATCACAGAGGCCAGAAGAGACGGTAGGATCTCACAGAAC
TAGGATTACAGATGATTGTGAAGCGCTGTGTGGTGCTGCGAATCAAACCC
AGAGAGAGACCTTTCTCTTTAGGAAAGATGGGCTCAGCTGATTTCATGAT
TTCCTAACATGCTGTTAGGGAGACATCCCCCCCAGAGGGACAAGCCAGAG
TCACATTAACAAGAGTCTCCTGCTGTCCTCAGGCAAGGCTGGGTCCCATT
GTGTGCAGACATGCTTGCTTCTGAGGGTCTCTGAATGGAAGGTGGGGAGA
ACTGGCTAGGTTCTGCCCAGTGATGGCTCCATTGAAAGAAGACATCTTTT
GGGTGCACCCATAGTTCCACCCCATGCCCTATAGAAAGGCTAGAGAGCCT
GCCATTCCTTACATTAGCCATGATGTCTCACTGGCTGGCTTTCTCCCCTC
TGGAGTCCCTCACAGGGACACACACCTGCTAGATGCTGGAAACTGGAGCG
GTCCCCCCCTTGTGGAGGGGCGTACTTGAATAACTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_j17.b1 MSMg01no362_j17.b1 CHROMAT_FILE:
MSMg01no362_j17.b1 PHD_FILE: MSMg01no362_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:02 2005
         (538 letters)



>mm_chr9_106093654_106094591
          Length = 938

 Score = 1035 bits (535), Expect = 0.0
 Identities = 535/535 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaggattgctgcttccttgactgaatcagaataggtgaagaccttgaccttga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaggattgctgcttccttgactgaatcagaataggtgaagaccttgaccttga 263

                                                                       
Query: 64  cctttggaagaaaatattctggcttgggtttagttgactatgttggctctccagctcaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctttggaagaaaatattctggcttgggtttagttgactatgttggctctccagctcaga 323

                                                                       
Query: 124 ctgctctaagaatgaaagccctcaaagcctggtgggatgtgcaacaagttggatctgcgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgctctaagaatgaaagccctcaaagcctggtgggatgtgcaacaagttggatctgcgg 383

                                                                       
Query: 184 ctgaaagttataaccatacaaacatggcctgagtccagtccccagatcccgtggtaaaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgaaagttataaccatacaaacatggcctgagtccagtccccagatcccgtggtaaaag 443

                                                                       
Query: 244 gagaaaacctactttctgaaagttgtccttaggtttccacacatgccatggcatttgcaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagaaaacctactttctgaaagttgtccttaggtttccacacatgccatggcatttgcaa 503

                                                                       
Query: 304 cagagtcacaaattataaagtggaatactgcctggcagcagctactgcgtttccaggctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagagtcacaaattataaagtggaatactgcctggcagcagctactgcgtttccaggctt 563

                                                                       
Query: 364 tccaatgcagaatgctcccacccccaccagttctacctacacattggatctgtagagctc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tccaatgcagaatgctcccacccccaccagttctacctacacattggatctgtagagctc 623

                                                                       
Query: 424 cattgtccccccagatcctccaaatgcctccaaccctgctggtgccttattgtcaccaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cattgtccccccagatcctccaaatgcctccaaccctgctggtgccttattgtcaccaag 683

                                                                  
Query: 484 tgcctccaggctccctaatgcctcattatcttcaaataccacaaatcctcccatt 538
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgcctccaggctccctaatgcctcattatcttcaaataccacaaatcctcccatt 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no362_j17.g1 MSMg01no362_j17.g1 CHROMAT_FILE:
MSMg01no362_j17.g1 PHD_FILE: MSMg01no362_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:02 2005
         (578 letters)



>mm_chr9_106268435_106269412
          Length = 978

 Score = 1064 bits (550), Expect = 0.0
 Identities = 553/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 25  gtgcctctgcctcccaagtgttaggattaaaggtgtgcaccatcacctctcggcttcttt 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 gtgcctctgcctcccaagtgttaggattaaaggtgtgcaccatcacctctcggcttcttt 919

                                                                       
Query: 85  taaattttttaaaaagattgaagtgttttctctatttgaatgtccatggatcacagaggc 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 taaattttttaaaaagattgaagtgttttctctatttgaatgtccatggatcacagaggc 859

                                                                       
Query: 145 cagaagagacggtaggatctcacagaactaggattacagatgattgtgaagcgctgtgtg 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 cagaagagacggtaggatctcacagaactaggattacagatgattgtgaagcgctgtgtg 799

                                                                       
Query: 205 gtgctgcgaatcaaacccagagagagacctttctctttaggaaagatgggctcagctgat 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gtgctgcgaatcaaacccagagagagacctttctctttaggaaagatgggctcagctgat 739

                                                                       
Query: 265 ttcatgatttcctaacatgctgttagggagacatcccccccagagggacaagccagagtc 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttcatgatttcctaacatgctgttagggagacatcccccccagagggacaagccagagtc 679

                                                                       
Query: 325 acattaacaagagtctcctgctgtcctcaggcaaggctgggtcccattgtgtgcagacat 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acattaacaagagtctcctgctgtcctcaggcaaggctgggtcccattgtgtgcagacat 619

                                                                       
Query: 385 gcttgcttctgagggtctctgaatggaaggtggggagaactggctaggttctgcccagtg 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gcttgcttctgagggtctctgaatggaaggtggggagaactggctaggttctgcccagtg 559

                                                                       
Query: 445 atggctccattgaaagaagacatcttttgggtgcacccatagttccaccccatgccctat 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 558 atggctccattgaaagaagacatcttttgggtgcacccatagttccaccccatgccctag 499

                                                                       
Query: 505 agaaaggctagagagcctgccattccttacattagccatgatgtctcactggctggcttt 564
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agaaaggctagagagcctgccattccttacattagccatgatgtctcactggctggcttt 439

                         
Query: 565 ctcccctctggagt 578
           ||||||||||||||
Sbjct: 438 ctcccctctggagt 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)