Query= MSMg01no362_l19.b1 MSMg01no362_l19.b1 CHROMAT_FILE:
MSMg01no362_l19.b1 PHD_FILE: MSMg01no362_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:13 2005
(500 letters)
>mm_chr9_44170684_44171583
Length = 900
Score = 683 bits (353), Expect = 0.0
Identities = 370/383 (96%), Gaps = 12/383 (3%)
Strand = Plus / Minus
Query: 1 gaaatcctcatcagtgactgagcattttattgatttgtctgtcccccattgtcaccacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaaatcctcatcagtgactgagcattttattgatttgtctgtcccccattgtcaccacaa 324
Query: 61 acaaacaaaaacctcaagactttcttggttagagtaaactttctgactggtatacagtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acaaacaaaaacctcaagactttcttggttagagtaaactttctgactggtatacagtgg 264
Query: 121 tgtattttctatagagatctgcacagaaagtacatactgtccatctagctgcttct---- 176
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tggattttctatagagatctgcacagaaagtacatactgtccatctagctgcttcttttt 204
Query: 177 --------tttttgtttttgtttttttcgagacagtgtttctctgtgtagccctggctgt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgtttttgtttttgtttttgtttttttcgagacagtgtttctctgtgtagccctggctgt 144
Query: 229 cctggaactcactctgtctgtagaccaggctggtctcgaactcagaaatctgcctgtctc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 cctggaactcactctgtctgtagaccaggctggtctcgaactcagaaatctgcctgtctc 84
Query: 289 tgcctcccaagtgctgggattaaaggcgtgcgccaccaccacccggctctagttgcttct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tgcctcccaagtgctgggattaaaggcgtgcgccaccaccacccggctctagttgcttct 24
Query: 349 tgatagcataattttacttataa 371
|||||||||||||||||||||||
Sbjct: 23 tgatagcataattttacttataa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_l19.g1 MSMg01no362_l19.g1 CHROMAT_FILE:
MSMg01no362_l19.g1 PHD_FILE: MSMg01no362_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:13 2005
(557 letters)
>mm_chr9_43981350_43982306
Length = 957
Score = 1056 bits (546), Expect = 0.0
Identities = 554/557 (99%)
Strand = Plus / Plus
Query: 1 accgtaaaaggaacctaatatgaacatgaaaataaatttattttggtcaataatttctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accgtaaaaggaacctaatatgaacatgaaaataaatttattttggtcaataatttctgg 260
Query: 61 tcaataatactcagaaatactctaaactaggagaaggaggactgtgtttttgacactaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaataatactcagaaatactctaaactaggagaaggaggactgtgtttttgacactaga 320
Query: 121 tagctactgctctttatgtaaagcggggagggcttcaagaattacttttctctagcaaca 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tagctactgctctttatgtaaagcggggagggcttcaagaattatttttctctagcaaca 380
Query: 181 aatgaaagatggaaataatgtcttacatctctctccaatcaaatgtcacacagcaaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaaagatggaaataatgtcttacatctctctccaatcaaatgtcacacagcaaataa 440
Query: 241 gaagaaaccccacagtcaactctctgagcttacgctgacagggctatatttacttttagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagaaaccccacagtcaactctctgagcttacgctgacagggctatatttacttttagg 500
Query: 301 gagacagttagaggatgcaccaagcaaacataaaaactttgcacagccacaaccacacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagacagttagaggatgcaccaagcaaacataaaaactttgcacagccacaaccacacaa 560
Query: 361 tcagaatagaaaggcagggctggagagatggctcagcagttaagagcactggctgctctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagaatagaaaggcagggctggagagatggctcagcagttaagagcactggctgctctt 620
Query: 421 ccaagaggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatctgtaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaagaggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatctgtaatg 680
Query: 481 agatatgactcccttttctggagtgtctgaagacagctacagtgtacttacntataataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 agatatgactcccttttctggagtgtctgaagacagctacagtgtacttacatataataa 740
Query: 541 ataaataaaaatcttta 557
||||||||| |||||||
Sbjct: 741 ataaataaagatcttta 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
