BAC Information

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BAC

Clone NameMSMg01-362M14
Chromosome9 (Build37)
Map Location 41,591,717 - 41,750,678
singlet/doubletdoublet
Overlap gene6720432D03Rik
Upstream gene9030425E11Rik, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566
Downstream geneSorl1, Sc5d, Tecta, Tbcel, Grik4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362M14.T7 (MSMg01no362_m14.b1)MSMg01-362M14.TJ (MSMg01no362_m14.g1)
ACCAG471389AG471390
length764757
length of high quality
(start - end)		488 (46 - 533)496 (74 - 569)
definitionCHROMAT_FILE: MSMg01no362_m14.b1 PHD_FILE: MSMg01no362_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:17 2005CHROMAT_FILE: MSMg01no362_m14.g1 PHD_FILE: MSMg01no362_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,750,195 - 41,750,678)(41,591,717 - 41,592,212)
sequence
TAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCTCTCCAGTAGTTAAGACAACATAGTCTAGGTGTTTGTGAA
AGTCCAAAAGGCAGATTTTCATAAGCGTTCTTGGGACCCAGCTATTATTA
AGAGAGCAGAAGGATAATGTTTGTGAATTTTGTTTCAAAGTGTGTCTCCC
CCCACCCCCCATTGGATCCTAATTAGTGTTTGCTACAACAAACCAAGAAG
GAAGAAAGGAGAGAAACAGCTCCCATCTCTGCAGATGGCAAACCGCACAG
AAGGGTCTAGTTCCTCACCTGGAGGGGCTGGACTTGAATTTTAAGGTTTT
AAGGTTCTGACTATTGAAAGAGCTTCTCTGATGGTAGAAGGTGTGTGTAG
CATGCATCACCTGGTTCATCTATCTGGGATGAAGATGGCAGAAAACTGCT
CTGAGAACAGGCCTTCAACTCCATCACTACCTATTTGGTGTCTGTTGGGA
TCTTTAGAGTCGGTAGGGGAGGGGAACGTTAAAACTCAAGTTTATAAATA
TGTTCATTATGCTTTCTTCCTTATAACAGAGGTGTTTACTGTACTATCCA
AGTTCTGATTACAAATGAATATACAGTGAACCGTTGAACCAAGCATGAAT
TTTTAATAACTACAGGTCTGAATTAATCTTTGCCCAAAACTGTTGCCCAA
GCCTCTTGTTATAAACGAAAAATTTCCTCATTGCTTTGTCCTTATTTTTC
TTCTTTCCTACTTT

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGCACACAAAGAGCTCTTGTGTAAA
AGAAAGGTTTGATGCATCTGTTTAACTGCAGGTTGCAAAAATAGCTGGGT
AATTCAGAGCTGATCCTAACAGAACCTGGATATATACACATCCAAGATGT
CCAATGATGGGTGATTTTTTGTCTGGTGGGAGGTGCTTCCTTTCTTTGTA
AAGTCCCAGGTAGGAAAGAGAATGTTTTTGAGAGATCCTGACACTGGAAC
TGAATTATCCAGTGATCTCTTCTGACCTCAACAACTGAGATATGGTGAAA
AAAAAAGTTACCTATTAAAATACATTTTATTTTTGATTTGTGTGGTTTTG
CATATGTGTAAGCATGAGTATGGCTCTTCAAAATCGCCTTATTTAAAAGT
ATTTATACCTTTGAAATAGTCCCTTAAAATAAATGTATCTTGAGCTTTAA
TCTAAAAACATTTGCTTGCTGGCTTCCCTATGACGCAGAGGAGAAAGATG
GTTTGTGAAATCCAACTGCATTTCCTAATANACACCTGACCCTTCTAAAT
GAGGTTATACTCATTGGATCTTGTTATCTTTATTTCCGACGCNAAGAAAT
GGCCCCCCGTACTAGGAGCATTGTGAAGATAAAATGACCCATTGCTGGCC
TGCTGCCCGGCACATAATAACGCTCAATACCCACAACGATCTATCCTTCC
TTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_m14.b1 MSMg01no362_m14.b1 CHROMAT_FILE:
MSMg01no362_m14.b1 PHD_FILE: MSMg01no362_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:17 2005
         (488 letters)



>mm_chr9_41749991_41750878
          Length = 888

 Score =  928 bits (480), Expect = 0.0
 Identities = 483/484 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcctctccagtagttaagacaacatagtctaggtgtttgtgaaagtccaaaa 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaattctttcctcaccagtagttaagacaacatagtctaggtgtttgtgaaagtccaaaa 629

                                                                       
Query: 65  ggcagattttcataagcgttcttgggacccagctattattaagagagcagaaggataatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggcagattttcataagcgttcttgggacccagctattattaagagagcagaaggataatg 569

                                                                       
Query: 125 tttgtgaattttgtttcaaagtgtgtctccccccaccccccattggatcctaattagtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tttgtgaattttgtttcaaagtgtgtctccccccaccccccattggatcctaattagtgt 509

                                                                       
Query: 185 ttgctacaacaaaccaagaaggaagaaaggagagaaacagctcccatctctgcagatggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttgctacaacaaaccaagaaggaagaaaggagagaaacagctcccatctctgcagatggc 449

                                                                       
Query: 245 aaaccgcacagaagggtctagttcctcacctggaggggctggacttgaattttaaggttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaaccgcacagaagggtctagttcctcacctggaggggctggacttgaattttaaggttt 389

                                                                       
Query: 305 taaggttctgactattgaaagagcttctctgatggtagaaggtgtgtgtagcatgcatca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taaggttctgactattgaaagagcttctctgatggtagaaggtgtgtgtagcatgcatca 329

                                                                       
Query: 365 cctggttcatctatctgggatgaagatggcagaaaactgctctgagaacaggccttcaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cctggttcatctatctgggatgaagatggcagaaaactgctctgagaacaggccttcaac 269

                                                                       
Query: 425 tccatcactacctatttggtgtctgttgggatctttagagtcggtaggggaggggaacgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tccatcactacctatttggtgtctgttgggatctttagagtcggtaggggaggggaacgt 209

               
Query: 485 taaa 488
           ||||
Sbjct: 208 taaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_m14.g1 MSMg01no362_m14.g1 CHROMAT_FILE:
MSMg01no362_m14.g1 PHD_FILE: MSMg01no362_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:17 2005
         (496 letters)



>mm_chr9_41591517_41592412
          Length = 896

 Score =  959 bits (496), Expect = 0.0
 Identities = 496/496 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcacacaaagagctcttgtgtaaaagaaaggtttgatgcatctgtttaactgcaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcacacaaagagctcttgtgtaaaagaaaggtttgatgcatctgtttaactgcaggt 260

                                                                       
Query: 61  tgcaaaaatagctgggtaattcagagctgatcctaacagaacctggatatatacacatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaaaaatagctgggtaattcagagctgatcctaacagaacctggatatatacacatcc 320

                                                                       
Query: 121 aagatgtccaatgatgggtgattttttgtctggtgggaggtgcttcctttctttgtaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatgtccaatgatgggtgattttttgtctggtgggaggtgcttcctttctttgtaaag 380

                                                                       
Query: 181 tcccaggtaggaaagagaatgtttttgagagatcctgacactggaactgaattatccagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccaggtaggaaagagaatgtttttgagagatcctgacactggaactgaattatccagt 440

                                                                       
Query: 241 gatctcttctgacctcaacaactgagatatggtgaaaaaaaaagttacctattaaaatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatctcttctgacctcaacaactgagatatggtgaaaaaaaaagttacctattaaaatac 500

                                                                       
Query: 301 attttatttttgatttgtgtggttttgcatatgtgtaagcatgagtatggctcttcaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttatttttgatttgtgtggttttgcatatgtgtaagcatgagtatggctcttcaaaa 560

                                                                       
Query: 361 tcgccttatttaaaagtatttatacctttgaaatagtcccttaaaataaatgtatcttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcgccttatttaaaagtatttatacctttgaaatagtcccttaaaataaatgtatcttga 620

                                                                       
Query: 421 gctttaatctaaaaacatttgcttgctggcttccctatgacgcagaggagaaagatggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctttaatctaaaaacatttgcttgctggcttccctatgacgcagaggagaaagatggtt 680

                           
Query: 481 tgtgaaatccaactgc 496
           ||||||||||||||||
Sbjct: 681 tgtgaaatccaactgc 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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