BAC Information

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BAC

Clone NameMSMg01-363C17
Chromosome9 (Build37)
Map Location 44,485,770 - 44,486,104
singlet/doubletsinglet
Overlap geneTreh
Upstream geneLOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660
Downstream genePhldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363C17.T7 (MSMg01no363_c17.b1)MSMg01-363C17.TJ (MSMg01no363_c17.g1)
ACCAG471673AG471674
length777842
length of high quality
(start - end)		417 (61 - 477)49 (72 - 120)
definitionCHROMAT_FILE: MSMg01no363_c17.b1 PHD_FILE: MSMg01no363_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:47 2005CHROMAT_FILE: MSMg01no363_c17.g1 PHD_FILE: MSMg01no363_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCTTACTGAA
TCCACAAAATCATTTCCTTGCTTGGGAACCACCCTGGCTTCTGGCACTTC
TAGCTGCAGTCCAGCTACTGGGACCTTGACATCAGGGGAGAGAGAGCAAG
CTCAGGTGACAAGAAAACAACAGATGTACTGTCCCCTCCCCCACGGGAAG
AACTGGCTAGTCAGGCCAGGTTCTCCCACACCTGAGAAGCAGAGGCCTGT
ACTGACATACTGACAGACAGTCCTGTAGGGCTGCCCGAATGCTGGCACAC
TCAGTGAAGATGTGCAAGGCAGCTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTTCTTCTATCATTCGGCTTGTCCCCAGAATTATTTATTTTAT
GTATGTGAGTACACTGTCACTGTCTTCACACACACCAGAAGAAGGTATCA
TATCTCCTTTCCGATGTTTTTAAGCCCCCATGTGGTTGGTGTGAAATGAA
CTCATCACCCCTGGAAGAATAGTCTATGGTTTTAATCACTGGAGACCTCC
CTTCTTTTCTCTCCAGATGATTTTCTAGAGTTATAATCTCACGGCCTCCG
GGGTCATATATAAAAGCACGTGTTCCTCCCCCTCCTCTTCCTTCCCCTTA
TATGTAATATTGAGGTGTGCTTTCTTN

NCCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGACAGCAGGATTCTGACTCTACAGCCCTTGGAGGGGG
GTGCCTAGGGTGGGGGGCTTGCACGATACTGGATGCTCCCCGTGTACAAG
GTGTGTAACTTATGTGGACTGGACTGGGCTTTATGATTGATAACTCCACT
TTCTCCCATCCTATCCTACCCTATTCAGTTCCTTATTCCCGCCGTTTTTT
TTTCTCCCTTTTACTCCCCTTCCATATCCCCTCCCTAAGTCACAAGCCCT
CGCTTAGGCCCTTTTTTTTTTTTCCATTGCCCCAGCACCCATTACCTGCC
CCTTCCCTTTTTTCCCTTCTTTCTTTTGTATCCTTATTGTCCTTCCTATC
CCCGATCCTTCCCCCCCAATTTTATCTTTTTCTGCCTTCCCCTCTTCTAT
TTTTCCATTTACTCTTTTCCCCTTCCTTCCTATCCCCCCCCCTTCCTTCC
GTTTCCTTATCTGTTTCTTTCTTCTTCTCCCTCCCCCTCCTTTCTTCCTT
TCTTTTTCCGCCTCTCTTTTTTTCTTTCCTTCTTATCTTTTCTTCCCCTT
TTTCACTTTCCCCTATTCACCCTTCCCCTTTTCCTTATCCTACTTCTTTT
TTTTTATGCTTTCCCTTTCCTATTCCTTCTCCACCACGCATATTCCTATT
TTCCATTCTTCTACCAACGCATATTTTCCTTTTCCCCTTATTTCGCTATT
TATTCTCCATCCCCTCTTTTTTTCCTCTACCCTATATCTCTTCGCTATCT
TCTCTATACATCCTTTTATTATATTACTCCTCTACCCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_c17.b1 MSMg01no363_c17.b1 CHROMAT_FILE:
MSMg01no363_c17.b1 PHD_FILE: MSMg01no363_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:47 2005
         (417 letters)



>mm_chr9_44485643_44486459
          Length = 817

 Score =  617 bits (319), Expect = 0.0
 Identities = 331/335 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttccttgcttgggaaccaccctggcttctggcacttctagctgcagtccagctactg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 462 catttccttgcttgggaaccaccctggcttctggcacttctagctgcagtcctgctactg 403

                                                                       
Query: 61  ggaccttgacatcaggggagagagagcaagctcaggtgacaagaaaacaacagatgtact 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggaccttggcatcaggggagagagagcaagctcaggtgacaagaaaacaacagatgtact 343

                                                                       
Query: 121 gtcccctcccccacgggaagaactggctagtcaggccaggttctcccacacctgagaagc 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtcctctcccccacgggaagaactggctagtcaggccaggttctcccacacctgagaagc 283

                                                                       
Query: 181 agaggcctgtactgacatactgacagacagtcctgtagggctgcccgaatgctggcacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agaggcctgtactgacatactgacagacagtcctgtagggctgcccgaatgctggcacac 223

                                                                       
Query: 241 tcagtgaagatgtgcaaggcagctcttcttcttcttcttcttcttcttcttcttcttctt 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 222 tcagtgaagatgtgcaaggcagttcttcttcttcttcttcttcttcttcttcttcttctt 163

                                              
Query: 301 cttcttcttcttcttcttcttcttcttcttcttct 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 162 cttcttcttcttcttcttcttcttcttcttcttct 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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