CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACAACATCCTTGATAGTTTTCTGTAAAAGAAATTTAAAACACGAC
AGGTTGTACATTAAATCTATGTTACAAATCTGAAGAATTCACCTCATTTA
TAAACAGCTATGGCTTTGAAGCACGGGATCCAAAGCTATTCTGTGTTACT
ACTTCCCTTCAAGAGTGAGAGACAACCATGAGCAAGGACCAGCCTAGTGA
GCTGATGGGAGAGGAGATATGTCACAGCACTGGCAAGAGGTCTAAGTGGG
GCTTGTGGAAGTAGCAACTGGTACGCCTTCCAGTTTTAGCCTCCAGTTAG
AGAGGAAAGCCTATCCCTCAACACTAAACTTGGATTATGTCATACTTTGA
CATTTAGAAAAGAAACAGAGGAAAGCTATTCACTCTTACCTACATATAAG
ACTTGATTATAAAAAATATGAAAGGTTTTATTTGACAAAGAAAGTTCTGG
AGTTGTGCAAGAACTTAAGTGTCCAAGAACACTTGGGTCACAATACAGAT
GTGGCTGTGTTAAACAAACTGCACCACATTCCTAAAATGTGTAAATTACT
AAAATGTGTACAATGGAAAGTCTGGTCATGGGTATTGCCCTGCAATGTAN
AATGTTTTCAACTTCTATCTATCACTGTGTGTGAGTGCTCGTGCACATGT
GAACACACATATTATACCC

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTTGTATTTGTGAATTCAA
TGATATGAAAAGGCAAGGTATACCCTTCCCTAAAGAATGAAGGGAAAACC
ATAGACCCAGGCCATTAGCACATCCCATGAGAGCAGCTCAGAGACCTGCA
GTGGGTGCCACAGGTCATAGTCTAAAGAAACAACAACTTGGGGCTGGTTT
TGCCAGGTTGAGAGAACGCTTGAATTAGAAGGTCAGTGTACAGGGAGTAG
AAACAATGCCTGTATTTTGCATTTTTTCACACAGTATAGAGCAAGTTGAG
GGGTGAAGTGGTTTTTTGGAGGGGGTATGGGTGCTGTGCTCCTTTCTTTC
CCTCTTCTTCCCCCTTCCCCCCCCGGCCCTCTCTCCTTGGCGGCCCTCTC
CCCCTTCGTTTTTTTTCCTTTGCCGTCTTGCCCTTCCTCCTTTGCCCCCC
CCTTGTTCCTTTCCGTTTCTTTTTTTTTCTTTTCCCGCTTCCCCTCTTTC
TTCCCCTCCTTTTCCCCCCCCTCCTTTTCCTCTCTTCTTTCTTTTCTCCC
CCTTGCCCGATCCGTTTGTACCTGCCGTTGTCCCATCCCCCTTCTTCATT
TCTCTCTCCCTTCTCGTCCCCATCCCCCCCCCATTTCGCTTCCTTTCTTT
TCTCTCCTTCTTCTCCTTCTCCTTTCTCCTTTTTTACCCCCCCCCTTTTT
TCCCGCCCCTATCACACCCCACTCCCTTTCCTCCCTTTTTCTCCTCTCTC
TCCTCCCN

Query= MSMg01no363_m01.b1 MSMg01no363_m01.b1 CHROMAT_FILE:
MSMg01no363_m01.b1 PHD_FILE: MSMg01no363_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:34 2005
         (541 letters)



>mm_chr9_67742423_67743363
          Length = 941

 Score =  984 bits (509), Expect = 0.0
 Identities = 530/537 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacaacatccttgatagttttctgtaaaagaaatttaaaacacgacaggttgta 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaattcaacaacagcattgatagttttctgtaaaagaaatttaaaacacgacaggttgta 682

                                                                       
Query: 65  cattaaatctatgttacaaatctgaagaattcacctcatttataaacagctatggctttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cattaaatctatgttacaaatctgaagaattcacctcatttataaacagctatggctttg 622

                                                                       
Query: 125 aagcacgggatccaaagctattctgtgttactacttcccttcaagagtgagagacaacca 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcatgggatccaaagctattctgtgttactacttcccttcaagagtgagagacaacca 562

                                                                       
Query: 185 tgagcaaggaccagcctagtgagctgatgggagaggagatatgtcacagcactggcaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagcaaggaccagcctagtgagctgatgggagaggagatatgtcacagcactggcaaga 502

                                                                       
Query: 245 ggtctaagtggggcttgtggaagtagcaactggtacgccttccagttttagcctccagtt 304
           ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 501 ggtctaagtggggcttgtggaagtagcaactggcacgccctccagttttagcctccagtt 442

                                                                       
Query: 305 agagaggaaagcctatccctcaacactaaacttggattatgtcatactttgacatttaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagaggaaagcctatccctcaacactaaacttggattatgtcatactttgacatttaga 382

                                                                       
Query: 365 aaagaaacagaggaaagctattcactcttacctacatataagacttgattataaaaaata 424
           ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 aaagaaatagaggaaagctattcactcttacctacttataagacttgattataaaaaata 322

                                                                       
Query: 425 tgaaaggttttatttgacaaagaaagttctggagttgtgcaagaacttaagtgtccaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaaggttttatttgacaaagaaagttctggagttgtgcaagaacttaagtgtccaaga 262

                                                                    
Query: 485 acacttgggtcacaatacagatgtggctgtgttaaacaaactgcaccacattcctaa 541
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacttgggtcacaatacagatgtggctgtgttaaacaaactgcaccacattcctaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no363_m01.g1 MSMg01no363_m01.g1 CHROMAT_FILE:
MSMg01no363_m01.g1 PHD_FILE: MSMg01no363_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:34 2005
         (306 letters)



>mm_chr9_67562105_67562810
          Length = 706

 Score =  561 bits (290), Expect = e-164
 Identities = 302/306 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatttgtatttgtgaattcaatgatatgaaaaggcaaggtatacccttccctaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatttgtatttgtgaattcaatgatatgaaaaggcaaggtatacccttccctaaagaa 260

                                                                       
Query: 61  tgaagggaaaaccatagacccaggccattagcacatcccatgagagcagctcagagacct 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagggaaaaccataggcccaggccattagcacatcccatgagagcagctcagagacct 320

                                                                       
Query: 121 gcagtgggtgccacaggtcatagtctaaagaaacaacaacttggggctggttttgccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagtgggtgccacaggtcatagtctaaagaaacaacaacttggggctggttttgccagg 380

                                                                       
Query: 181 ttgagagaacgcttgaattagaaggtcagtgtacagggagtagaaacaatgcctgtattt 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagagaacgcttgaatcagaaggtcagtgtacagggagtagaaacaatgcctgtattt 440

                                                                       
Query: 241 tgcattttttcacacagtatagagcaagttgaggggtgaagtggttttttggagggggta 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcatttcctcacacagtatagagcaagttgaggggtgaagtggttttttggagggggta 500

                 
Query: 301 tgggtg 306
           ||||||
Sbjct: 501 tgggtg 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)