BAC Information

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BAC

Clone NameMSMg01-363M05
Chromosome9 (Build37)
Map Location 94,489,037 - 94,668,253
singlet/doubletdoublet
Overlap geneSlc9a9
Upstream geneLOC674371, LOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363M05.T7 (MSMg01no363_m05.b1)MSMg01-363M05.TJ (MSMg01no363_m05.g1)
ACCAG472122AG472123
length754757
length of high quality
(start - end)
466 (70 - 535)589 (75 - 663)
definitionCHROMAT_FILE: MSMg01no363_m05.b1 PHD_FILE: MSMg01no363_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:35 2005CHROMAT_FILE: MSMg01no363_m05.g1 PHD_FILE: MSMg01no363_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,489,037 - 94,489,490)(94,667,682 - 94,668,253)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
CACCTTTTACAGTACCAAACACATTTCCAATCTCATCTCCATGCACAGAA
TAGGTTTTTGCTGACCTGCCATAGGTCTGTGAGCCTCGTGATGAAGGTTA
GCACAAAGGGAAGATTTCATCTCAGGGAAATAGAGGAAGTCTGCTCAGAA
AGAACTTGCTCTTCCCTCTTGCTCCTCGACTGGCAGAGCCGATGATTCTG
TTTTTCCCAGAGGCCTATAGGGGACAGGGTTGAGAGTAGTAGCTGCTGAG
GCTACACCAGAAGCTTATGTTTGCCCAGAAAGATGTGTCCTGGGATGAGT
GGGAACATATCACAAAGGTGGGAAGGGAGTCCGTGGGCGACAGGCTCAGG
GATATTTTTTTCTGATCAGTTGTAGGACATTTTGAGGACTTCTGTTCTGA
CCTGTGTTTGGAGATCTCTTTGCTTCCTCTTGAGGTTATTCTGCTGTTCT
TCAGCTAACTTCAAGAGTTAGCTTGCTACTACTCTATCTGCTGAGGCTGA
GGCCAAGGTCTGGCCCTGGAAGATGTTTAGCACTTATTCACAGTTCTCCT
CTGTTTTGCTCACATCCAGATTAATGTTTTCAGATCCCTTCCTAATCCAT
CGGTAGCTTGACCGATTTTGTACGGTGACCCCAGCTTAATCGGATGGCCT
AACTATTAATGGCTTTGGGCCTTTAAGTTTGTGACTTCTCCTTTTTTCTC
CCCG
CCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCTTTGGGTTTACTGAAAATAATA
TCTTTTCATTTTCTTATTACTTGCTCTATCCCAGCTACAATTAGCGTTCT
CTGCTTGTCACTTACTATTTCCGGCTTTTGCCAAGTTGTTCTGATGAATG
GCAGCGGCATTTTTATTTAAGAAAGACAGCAGGTACTATAGTGAAGTTTG
AAACACAAAAATAAAGACTTGATTCCAAACTCACTCAATGCCTATAATAA
GAATTAAAGAATTAAAATTTTTTTCTCCCCAGACGGCAGATCTGGGAAGT
AACCTGAGGGTTTCAAATGATCCATACCTTACATCCAGTAATTGATATCT
GACACTAATATTTGTTATAGAAAACATGACTCCCCAGCATTTATGTTGGG
GGTTAAGCTAACTCTCTAAATAAAAAGTATTGCTCAATGTAAAAAAATAA
AATAAAAATGTGAGTTAACAAAAAGACAGATACCTAGTCTTATTCCACTA
ACATACCGGCTTTGTTACCACCATCATAATGAACAATGCTTAAATCCATC
AATTACATGAAATTACCCATATGTCCTGTTAACACTGTACATACATATGC
ATTCTGTAACTTAGNCCTCACAAAACTGTTACAAGACTCTATGATAGAAG
CTTAAAACCAGTGTAAGCAATTCACATCCATTCCTGGGTTGTTGTGCTTC
TTTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_m05.b1 MSMg01no363_m05.b1 CHROMAT_FILE:
MSMg01no363_m05.b1 PHD_FILE: MSMg01no363_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:35 2005
         (466 letters)



>mm_chr9_94488837_94489702
          Length = 866

 Score =  746 bits (386), Expect = 0.0
 Identities = 441/466 (94%), Gaps = 12/466 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatttccaatctcatctccatgcacagaataggtttttgctgacctgccataggtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatttccaatctcatctccatgcacagaataggtttttgctgacctgccataggtctg 260

                                                                       
Query: 61  tgagcctcgtgatgaaggttagcacaaagggaagatttcatctcagggaaatagaggaag 120
           ||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||
Sbjct: 261 tgagcctcgtgatgaaggttagctcaaagggaaggtttcatctcagggaaacagaggaag 320

                                                                       
Query: 121 tctgctcagaaagaacttgctcttccctcttgctcctcgactggcagagccgatgattct 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tctgctcagaaagaacttgctcttccttcttgctcctcgactggcagagccgatgattct 380

                                                                       
Query: 181 gtttttcccagaggcctataggggacagggttgagagtagtagctgctgaggctacacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gtttttcccagaggcctataggggacagggttgagagtagtagctgctgaggctacaccg 440

                                                                       
Query: 241 gaagcttatgtttgcccagaaagatgtgtcctgggatgagtgggaacatatcacaaaggt 300
           |||||  ||||||||||||||||||||||||||||||||| |||||||       |||||
Sbjct: 441 gaagcagatgtttgcccagaaagatgtgtcctgggatgagcgggaaca-------aaggt 493

                                                                       
Query: 301 gggaagggagtccgtgggcgacaggctcagggatatttttttctgatcagttgtaggaca 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gggaagggagtctgtgggcgacaggctcagggatatttttttctgatcagttgtaggaca 553

                                                                       
Query: 361 ttttgaggacttctgttctgacctgtgtttggagatctctttgcttcctcttgaggttat 420
           |||||||||||||||     |||||||||||||||||||||  ||||||||| |||||||
Sbjct: 554 ttttgaggacttctg-----acctgtgtttggagatctcttcccttcctcttaaggttat 608

                                                         
Query: 421 tctgctgttcttcagctaacttcaagagttagcttgctactactct 466
           ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 609 tctgctgttcttcggctaacttcaagagttagcttgctactactct 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no363_m05.g1 MSMg01no363_m05.g1 CHROMAT_FILE:
MSMg01no363_m05.g1 PHD_FILE: MSMg01no363_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:35 2005
         (589 letters)



>mm_chr9_94667482_94668467
          Length = 986

 Score = 1007 bits (521), Expect = 0.0
 Identities = 560/581 (96%), Gaps = 15/581 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctttgggtttactgaaaataatatcttttcattttcttattacttgctctatcccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tctctttgggtttactgaaaataatatcttttcattttcttattacttgctctatcccag 713

                                                                       
Query: 61  ctacaattagcgttctctgcttgtcacttactatttccggcttttgccaagttgttctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ctacaattagcgttctctgcttgtcacttactatttccggcttttgccaagttgttctga 653

                                                                       
Query: 121 tgaatggcagcggcatttttatttaagaaagacagcaggtactatagtgaagtttgaaac 180
           ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 652 tgaatggcagcagcatttttatttaagaaaggcagcaggtactatagtgaagtttgaaac 593

                                                                       
Query: 181 acaaaaataaagacttgattccaaactcactcaatgcctataataagaattaaagaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 acaaaaataaagacttgattccaaactcactcaatgcctataataagaattaaagaatta 533

                                                                       
Query: 241 aaattttttt------ctccccagacggcagatctgggaagtaacctgagggtttcaaat 294
           |||      |      ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaa------tgaaaacctccccagacggcagatctgggaagtaacctgagggtttcaaat 479

                                                                       
Query: 295 gatccataccttacatccagtaattgatatctgacactaatatttgttatagaaaacatg 354
           ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||
Sbjct: 478 gatccataccttacatccagtgattgatatctgacaccaatatttgttacagaaaacatg 419

                                                                       
Query: 355 actccccagcatttatgttgggggttaagctaactctctaaataaaaagtattgctcaat 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 actccccagcatttatgttgggggttaagctaactctctaaataaaaagtattgctcaat 359

                                                                       
Query: 415 gtaaaaaaataaaataaaaatgtgagttaacaaaaagacagatacctagtcttattccac 474
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gt---aaaataaaataaaaatgtgagttaacaaaaagacagatacctagtcttattccac 302

                                                                       
Query: 475 taacataccggctttgttaccaccatcataatgaacaatgcttaaatccatcaattacat 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 301 taacataccggctttgttaccaccatcataatgaacaatgcttaaatccatcaattacac 242

                                                    
Query: 535 gaaattacccatatgtcctgttaacactgtacatacatatg 575
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaattacccatatgtcctgttaacactgtacatacatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 986
Length adjustment: 10
Effective length of query: 579
Effective length of database: 976
Effective search space:   565104
Effective search space used:   565104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)