Query= MSMg01no363_m05.b1 MSMg01no363_m05.b1 CHROMAT_FILE:
MSMg01no363_m05.b1 PHD_FILE: MSMg01no363_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:35 2005
(466 letters)
>mm_chr9_94488837_94489702
Length = 866
Score = 746 bits (386), Expect = 0.0
Identities = 441/466 (94%), Gaps = 12/466 (2%)
Strand = Plus / Plus
Query: 1 cacatttccaatctcatctccatgcacagaataggtttttgctgacctgccataggtctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatttccaatctcatctccatgcacagaataggtttttgctgacctgccataggtctg 260
Query: 61 tgagcctcgtgatgaaggttagcacaaagggaagatttcatctcagggaaatagaggaag 120
||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||
Sbjct: 261 tgagcctcgtgatgaaggttagctcaaagggaaggtttcatctcagggaaacagaggaag 320
Query: 121 tctgctcagaaagaacttgctcttccctcttgctcctcgactggcagagccgatgattct 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tctgctcagaaagaacttgctcttccttcttgctcctcgactggcagagccgatgattct 380
Query: 181 gtttttcccagaggcctataggggacagggttgagagtagtagctgctgaggctacacca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttttcccagaggcctataggggacagggttgagagtagtagctgctgaggctacaccg 440
Query: 241 gaagcttatgtttgcccagaaagatgtgtcctgggatgagtgggaacatatcacaaaggt 300
||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 441 gaagcagatgtttgcccagaaagatgtgtcctgggatgagcgggaaca-------aaggt 493
Query: 301 gggaagggagtccgtgggcgacaggctcagggatatttttttctgatcagttgtaggaca 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gggaagggagtctgtgggcgacaggctcagggatatttttttctgatcagttgtaggaca 553
Query: 361 ttttgaggacttctgttctgacctgtgtttggagatctctttgcttcctcttgaggttat 420
||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||
Sbjct: 554 ttttgaggacttctg-----acctgtgtttggagatctcttcccttcctcttaaggttat 608
Query: 421 tctgctgttcttcagctaacttcaagagttagcttgctactactct 466
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 609 tctgctgttcttcggctaacttcaagagttagcttgctactactct 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_m05.g1 MSMg01no363_m05.g1 CHROMAT_FILE:
MSMg01no363_m05.g1 PHD_FILE: MSMg01no363_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:35 2005
(589 letters)
>mm_chr9_94667482_94668467
Length = 986
Score = 1007 bits (521), Expect = 0.0
Identities = 560/581 (96%), Gaps = 15/581 (2%)
Strand = Plus / Minus
Query: 1 tctctttgggtttactgaaaataatatcttttcattttcttattacttgctctatcccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tctctttgggtttactgaaaataatatcttttcattttcttattacttgctctatcccag 713
Query: 61 ctacaattagcgttctctgcttgtcacttactatttccggcttttgccaagttgttctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ctacaattagcgttctctgcttgtcacttactatttccggcttttgccaagttgttctga 653
Query: 121 tgaatggcagcggcatttttatttaagaaagacagcaggtactatagtgaagtttgaaac 180
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 652 tgaatggcagcagcatttttatttaagaaaggcagcaggtactatagtgaagtttgaaac 593
Query: 181 acaaaaataaagacttgattccaaactcactcaatgcctataataagaattaaagaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 acaaaaataaagacttgattccaaactcactcaatgcctataataagaattaaagaatta 533
Query: 241 aaattttttt------ctccccagacggcagatctgggaagtaacctgagggtttcaaat 294
||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaa------tgaaaacctccccagacggcagatctgggaagtaacctgagggtttcaaat 479
Query: 295 gatccataccttacatccagtaattgatatctgacactaatatttgttatagaaaacatg 354
||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||
Sbjct: 478 gatccataccttacatccagtgattgatatctgacaccaatatttgttacagaaaacatg 419
Query: 355 actccccagcatttatgttgggggttaagctaactctctaaataaaaagtattgctcaat 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 actccccagcatttatgttgggggttaagctaactctctaaataaaaagtattgctcaat 359
Query: 415 gtaaaaaaataaaataaaaatgtgagttaacaaaaagacagatacctagtcttattccac 474
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gt---aaaataaaataaaaatgtgagttaacaaaaagacagatacctagtcttattccac 302
Query: 475 taacataccggctttgttaccaccatcataatgaacaatgcttaaatccatcaattacat 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taacataccggctttgttaccaccatcataatgaacaatgcttaaatccatcaattacac 242
Query: 535 gaaattacccatatgtcctgttaacactgtacatacatatg 575
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaattacccatatgtcctgttaacactgtacatacatatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 986
Length adjustment: 10
Effective length of query: 579
Effective length of database: 976
Effective search space: 565104
Effective search space used: 565104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|