Query= MSMg01no363_m09.b1 MSMg01no363_m09.b1 CHROMAT_FILE:
MSMg01no363_m09.b1 PHD_FILE: MSMg01no363_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:36 2005
(566 letters)
>mm_chr9_111441530_111442495
Length = 966
Score = 1056 bits (546), Expect = 0.0
Identities = 558/562 (99%)
Strand = Plus / Plus
Query: 5 gaattctctatataccaaggcttcttaattggatataggctcccatggggtagaattttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctatataccaaggcttcttaattggatataggctcccatggggtagaattttg 264
Query: 65 ttccatagaattgtctaattggagcttgggtggaaacagaggaggaagaaaaaaaatggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccatagaattgtctaattggagcttgggtggaaacagaggaggaagaaaaaaaatggt 324
Query: 125 agggacaccaagttctgaataaaaaaatcttgaaaggaaatctaagtgtgggttgttgga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agggacaccaagttctgaataaaaaaatcttgaaaggaaatctaagtgtgggttgttgga 384
Query: 185 ccctgcggttctcccaaacacacctggggagaagagaaggaaacagtgaccacccctccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctgcggttctcccaaacacacctggggagaagagaaggaaacagtgaccacccctccc 444
Query: 245 ccaatggggtgggagcttccaaaaccataaacagcagcatctggtgtttcttgagcctgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaatggggtgggagcttccaaaaccataaacagcagcatctggtgtttcttgagcctgg 504
Query: 305 cttggtgaatgtaaatttcaaaagggctgaacagaggcaagaaaggaacgtatggatgga 364
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 cttggtgaatataaatttcaaaagggctgaacagaggcaagagaggaacgtatggatgga 564
Query: 365 atggtccctaataacccagctccaccatctatgctggggatagaagtgaacaagccttgt 424
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 565 atggtccctaatagcccagctccaccatccatgctggggatagaagtgaacaagccttgt 624
Query: 425 gagtatctgaggctggcttagctagggattctattgctctgataaaacaccatgactcaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagtatctgaggctggcttagctagggattctattgctctgataaaacaccatgactcaa 684
Query: 485 aggcaacttgaggaggaaagagtttgtttccatttacaactcataggtcacaacttatga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggcaacttgaggaggaaagagtttgtttccatttacaactcataggtcacaacttatga 744
Query: 545 gggaaaggctgggcagaaactg 566
||||||||||||||||||||||
Sbjct: 745 gggaaaggctgggcagaaactg 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_m09.g1 MSMg01no363_m09.g1 CHROMAT_FILE:
MSMg01no363_m09.g1 PHD_FILE: MSMg01no363_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:36 2005
(572 letters)
>mm_chr9_111587712_111588684
Length = 973
Score = 992 bits (513), Expect = 0.0
Identities = 558/573 (97%), Gaps = 1/573 (0%)
Strand = Plus / Minus
Query: 1 attcaatccatcgcacctcaaaaccaagtaaattaaccaagtcacattgttgggtgaaat 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 attcaatccatcacacctcaaaaccaagtaaattaaccaagtcacattgttgggtgaaat 714
Query: 61 ggttaatgaccaactctcctttggcttctttgtccttgcgttggctacttcccacggtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ggttaatgaccaactctcctttggcttctttgtccttgcgttggctacttcccacggtga 654
Query: 121 aaataatcaagtgcttattccagcaccacctggaaactaggatacagtagaccctctggt 180
|||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct: 653 aaataatcaagtgcttattctagcaccacctggaaactaggatacagcagacccactggt 594
Query: 181 ctagagttctgcacagcatcctaagaggcaagcacatatatgcagtgtctgagtatgtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 593 ctagagttctgcacagcatcctaagaggcaagcacatatatgcagtgtctgagcatataa 534
Query: 241 catatacataattgcaccaaacataaaacaagggcatac-aaaatctctacatatccatt 299
|||||||| || |||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 533 catatacacaacagcaccaaacataaaacaagggcatacaaaaatctctaaatatccatt 474
Query: 300 tttctctgcaattttcttggaaagttgaattacagagggttgaagttagtaacagaagag 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 473 tttctctgcaattttcttggaaagttgaattacagagggttgaaattagtaacagaagag 414
Query: 360 agcatccattccaggtgtttttaaaactgtatccttttattgtatgaaactattttaagg 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agcattcattccaggtgtttttaaaactgtatccttttattgtatgaaactattttaagg 354
Query: 420 aaatttccaacatacacaaaggaagatagaaagtatgaagaaccatcacagatctaacca 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 353 aaatttccaacatacacaaaggaagatagaaagtatgaagaaccatcacagatctaacta 294
Query: 480 gctaaccttccctgcttattaactcattgacagtaacgtttgacattctaacccatcacc 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gctaaccgtccctgcttattaactcattgacagtaacgtttgacattctaacccatcacc 234
Query: 540 aacactgcttgctctcccagaggatcatcttaa 572
|||||||||||||||||||||||||||||||||
Sbjct: 233 aacactgcttgctctcccagaggatcatcttaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space: 541206
Effective search space used: 541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
