BAC Information

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BAC

Clone NameMSMg01-364C18
Chromosome9 (Build37)
Map Location 73,770,528 - 73,909,845
singlet/doubletdoublet
Overlap geneUnc13c
Upstream genePygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1, BC031353, Arpp19, LOC100040812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364C18.T7 (MSMg01no364_c18.b1)MSMg01-364C18.TJ (MSMg01no364_c18.g1)
ACCAG472433AG472434
length786785
length of high quality
(start - end)		465 (51 - 515)382 (81 - 462)
definitionCHROMAT_FILE: MSMg01no364_c18.b1 PHD_FILE: MSMg01no364_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:10 2005CHROMAT_FILE: MSMg01no364_c18.g1 PHD_FILE: MSMg01no364_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,770,528 - 73,770,988)(73,909,464 - 73,909,845)
sequence
NNTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGTTGATCGGATCATGAGTGTAAGTTCATGTAAGTGCTT
GTGTATGTGTGAAAATGCACAAATGCATCAATGTATATGTTAGGAAGCCA
GAGGTCAATGTCAGGTGCCCTCTTGATTATCTTTCCACATCATCTTTTGA
CACGGGATCCCTCACTAAATATGGAACTTGCTGATCCAGCTAGACTGGCT
GGCCGCCAAGGTCCAAGCATCCTCCTATCTGTGCCTAAGCTCAGTTTTGA
GCTTACGGGTGTATACCAGCACATCCAGATATTACACGAGTCCTAGGGAT
CTAAACTCAGTCTCACGTGTCTGTACAGCAAGTCCTGTACTGACTGAGCT
ATCTCCCTAGCTTGGGAAGCATATTCTTTTATCTTGTCTTTTCCCATCCA
CCTACCCAGAGCTCCACACACTCCTGGACACTCATTGAATGCTGCTTCAC
TTGGTTTCTTTCTTGCTCCTGTCCCCTCCCCCCAAAAGATATTATCAAGC
TGGATGGTCCCGGCAGTTGGGTGCTCCTGTGGATCCTGAGAACATTAAGA
AAAACGGCTATATAGGTCACCTCCGTTCGAAAAAGTGGCTGGAAAAAGAC
TTTTTTTGTGTTTCTNAACCCCAAATAACCCTTTATTGGTCTTTTTCCCC
CATGGGGTTTTGGGGCCGCCTCCCCCTTTCCGGGGAAAGGGTTTCATGGA
AAATCCAAACGCGGGGGTTTCTTCCCCCAATCCTCA

NNNNCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTATGATGCAAATTTTGG
GAGAAATAGGATGTGGATCATGGTGTCCCATAACTCAACCACATTTTGAA
ATGGGCAATTTTTCCAACACAGGTGCCAGTCATGTAGAGCCTCAGTAGGG
ACAACCAGAAGGGCTCTGTTCCCCCTGCTTTATCTCTGCAAAGACCGAGC
TGCTCTTTGTCCTGCTTGTTTTCTTCAGTCCTTTGATTCCTGTAGACTCA
ATTCTTCCTGCTCCATGGGAACACCCATTCTATTACAGAGTAGGGCCTCC
CTATTCTAGAATCACAAATCAGCATGAAATACGTCTCCAAACCAGATTTG
CCTTTCCTACTTTTCTGAGATTGTCGTAGGCCTTTCAGTGGTGATTGTGT
TGAACATGTAGATTTAGGAGCAGTAAGGCCACTTTACAATGTCAAGTCTG
CCAAGCCAGAAACATGGGATAGACCGACCACCTCTCTATTGACTGGGGGC
TTCTCTGCCTATAGTTTTTAACGTTCATTCCTAAAGGTTTTCTTTTCCTT
GGGGGGGGGTAATTCCAAAATGTGGGAAGGGGGCAATTGGTGATGGTAGT
TTTTTATACATACCTTCTTCCTTTCTTCTCGTGTCTTGGCTTTATCCTCA
CACCTTCCTTCTTTCAGTTCTCTCCACATTCATATATTATGTGCTTCTTG
TGTTGTGATCCTTCCGTTCTCCTGTTTATCGTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_c18.b1 MSMg01no364_c18.b1 CHROMAT_FILE:
MSMg01no364_c18.b1 PHD_FILE: MSMg01no364_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:10 2005
         (465 letters)



>mm_chr9_73770324_73771188
          Length = 865

 Score =  830 bits (429), Expect = 0.0
 Identities = 453/461 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgttgatcggatcatgagtgtaagttcatgtaagtgcttgtgtatgtgtgaaa 64
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 205 gaattcatgttgatcggatcatgagtgtaagttcgtgtgagtgcttgtgtatgtgtgaaa 264

                                                                       
Query: 65  atgcacaaatgcatcaatgtatatgttaggaagccagaggtcaatgtcaggtgccctctt 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcacaaatgcatcagtgtatatgttaggaagccagaggtcaatgtcaggtgccctctt 324

                                                                       
Query: 125 gattatctttccacatcatcttttgacacgggatccctcactaaatatggaacttgctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gattatctttccacatcatcttttgacacgggatccctcactaaatatggaacttgctga 384

                                                                       
Query: 185 tccagctagactggctggccgccaaggtccaagcatcctcctatctgtgcctaagctcag 244
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcagctagactggctggccgccaaggtccaagcatcctcctatctgtgcctaagctcag 444

                                                                       
Query: 245 ttttgagcttacgggtgtataccagcacatccagatattacacgagtcctagggatctaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttgagcttacgggtgtataccagcacatccagatattacacgagtcctagggatctaa 504

                                                                       
Query: 305 actcagtctcacgtgtctgtacagcaagtcctgtactgactgagctatctccctagcttg 364
           |||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 actcggtcccacgtgtctgtacagcaagtcctgtcctgactgagctatctccctagcttg 564

                                                                       
Query: 365 ggaagcatattcttttatcttgtcttttcccatccacctacccagagctccacacactcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaagcatattcttttatcttgtcttttcccatccacctacccagagctccacacactcc 624

                                                    
Query: 425 tggacactcattgaatgctgcttcacttggtttctttcttg 465
           |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 tggacactcattgaatgctgcttcacttggtttcgttcttg 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no364_c18.g1 MSMg01no364_c18.g1 CHROMAT_FILE:
MSMg01no364_c18.g1 PHD_FILE: MSMg01no364_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:11 2005
         (382 letters)



>mm_chr9_73909264_73910045
          Length = 782

 Score =  700 bits (362), Expect = 0.0
 Identities = 377/382 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattatgatgcaaattttgggagaaataggatgtggatcatggtgtcccataactcaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cattatgatgcaaattttgggagaaataggatgtggatcatggtgtcccataactcaacc 523

                                                                       
Query: 61  acattttgaaatgggcaatttttccaacacaggtgccagtcatgtagagcctcagtaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acattttgaaatgggcaatttttccaacacaggtgccagtcatgtagagcctcagtaggg 463

                                                                       
Query: 121 acaaccagaagggctctgttccccctgctttatctctgcaaagaccgagctgctctttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acaaccagaagggctctgttccccctgctttatctctgcaaagaccgagctgctctttgt 403

                                                                       
Query: 181 cctgcttgttttcttcagtcctttgattcctgtagactcaattcttcctgctccatggga 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 402 cctgcttgttttcttcagtcctttgattcctgtagactcaattcttcccgctccatggga 343

                                                                       
Query: 241 acacccattctattacagagtagggcctccctattctagaatcacaaatcagcatgaaat 300
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 342 acacccattctattacagactaggacctccctattctagaatcacaaatcagcatgaaat 283

                                                                       
Query: 301 acgtctccaaaccagatttgcctttcctacttttctgagattgtcgtaggcctttcagtg 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 282 acgtctccaaaccagatttgcctttcctacttttctgagattgtcgcaggcctttcagtg 223

                                 
Query: 361 gtgattgtgttgaacatgtaga 382
           | ||||||||||||||||||||
Sbjct: 222 gcgattgtgttgaacatgtaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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