Query= MSMg01no365_e05.b1 MSMg01no365_e05.b1 CHROMAT_FILE:
MSMg01no365_e05.b1 PHD_FILE: MSMg01no365_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:43 2005
(523 letters)
>mm_chr9_73444532_73445455
Length = 924
Score = 478 bits (247), Expect = e-139
Identities = 303/325 (93%), Gaps = 10/325 (3%)
Strand = Plus / Minus
Query: 204 gctactttt-ttaatgatgaactcaagcctatcctattagagttaaactaatcatgaaga 262
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 608 gctacttttcttaatgatgaactcaagcctatcctatcagagttaaactaatcatgaaga 549
Query: 263 gaaagaaaactttaactttttaaacaaataaattataaggaaaaaaggcatcaaagataa 322
|||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||
Sbjct: 548 gaaagaaaacttgaacttttaaaagaaataaattataagggaaaaaggcatcaaagataa 489
Query: 323 gctcaaagatagttaaatatttagtttgtcaattatttacaaactgtaatctaaatgaat 382
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 488 gctcaaagatagttaaatatttagtttgtcaattatttacaaactgtaatctgaatgaat 429
Query: 383 ctttttcttcattttatcttaatggt-t---tagtggttacttctactccattctgacta 438
|||||||||||||||| |||||||| | ||| | |||| ||||| |||||| ||
Sbjct: 428 ctttttcttcattttaccttaatggcctcactag-g----cttccactcctttctgagta 374
Query: 439 gtaaggaaatgacaccaaacccagaacgctaaggtgaaatcagttattttacacctacca 498
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 373 gtaaggaaatgacaccaaacccagaacgctaaggtaaaatcagttattttacacctacca 314
Query: 499 atatcagaattactttctttttgtt 523
|||||||||||||||||||||||||
Sbjct: 313 atatcagaattactttctttttgtt 289
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 924
Length adjustment: 10
Effective length of query: 513
Effective length of database: 914
Effective search space: 468882
Effective search space used: 468882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_e05.g1 MSMg01no365_e05.g1 CHROMAT_FILE:
MSMg01no365_e05.g1 PHD_FILE: MSMg01no365_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:43 2005
(533 letters)
>mm_chr9_73376343_73377275
Length = 933
Score = 897 bits (464), Expect = 0.0
Identities = 526/566 (92%), Gaps = 34/566 (6%)
Strand = Plus / Plus
Query: 1 ttttgcaatgttaaaagaaaatataagaattaagtggctgggtcttgagtcctgtgctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ttttgcaatgttaaaagaaaatataagaattaagtggctgggtcttgagtcctgtgctaa 228
Query: 61 tttataagacaatcaaaagggaaccaggagtaaatgactggattgatatgtaaaataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tttataagacaatcaaaagggaaccaggagtaaatgactggattgatatgtaaaataaaa 288
Query: 121 gact-gggcttatgagctacaagagatgagctatccagagaatatttttagactagcaaa 179
|| | ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 289 ga-tcgggtttatgatctacaagggatgagctatccagagaatatttttagactagcaaa 347
Query: 180 tgaactacttagagaactgtctcaagcagaaaatttagagcaaactctctggagatctcc 239
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgaactgcttagagaactgtctcgagcagaaaatttagagcaaactctctggagatctcc 407
Query: 240 agaaaaagcaccagcttgaaccatgactcgattttaagtcatttgtttcactgttcccag 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 408 agaaaaagcaccagcttgaaccatgacttgattttaagtcatttgtttcactgttcccag 467
Query: 300 acacccctcctcagctccttttctttatgttgttgattttgttcttt-ttt--------- 349
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 468 acacccctcctcagctccttttctttatgttgttgattttgttctttctttctttctttc 527
Query: 350 --------------tctttctttctttttttt--------caatatctgagtctcttctc 387
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 528 tttctttctttctttctttctttcttttttttttttttttcaatatctgagtctcttctc 587
Query: 388 caacatcctttgagggaatgcttaggtgatccatcaatcaggggaagggcagagttgaga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 caacatcctttgagggaatgcttaggtgatccatcaatcaggggaagggcagagttgaga 647
Query: 448 gatggtgaggtacagggtcttaagacatggttagaatctctgctcaagcagccatggaaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gatggtgaggtacagggtcttaagacatggttagaatctctgctcaagcagccatggaaa 707
Query: 508 ccagagtcagcctggtccctctgatc 533
||||||||||||||||||||||||||
Sbjct: 708 ccagagtcagcctggtccctctgatc 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
