Query= MSMg01no365_e12.b1 MSMg01no365_e12.b1 CHROMAT_FILE:
MSMg01no365_e12.b1 PHD_FILE: MSMg01no365_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:44 2005
(498 letters)
>mm_chr9_49823225_49824122
Length = 898
Score = 899 bits (465), Expect = 0.0
Identities = 488/497 (98%), Gaps = 4/497 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctc--atttctgctaggaactgacaggacagttgggctacgtgtgagatcagc 61
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ggaattcctcagatt--tgctaggaactgacaggacagttgggctacgtgtgagatcagc 641
Query: 62 tagactatagaaaaagtccatagttctccaggtaggtcagaagcattagttgtagaaagc 121
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 640 tagactatagaaaaagtccatagttctccaagtaggtcagaagcattagttgtagaaagc 581
Query: 122 tgcattaagtcactgctcccaagcctgcaacctttcaccctgggctcaattctgcatgtg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tgcattaagtcactgctcccaagcctgcaacctttcaccctgggctcaattctgcatgtg 521
Query: 182 gcactgtagagaagaagggagctagagaaggggccagaaccatgccccttgccagctgcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gcactgtagagaagaagggagctagagaaggggccagaaccatgccccttgccagctgcc 461
Query: 242 taaccaagattatggttacataataaatcctatgtcaggcgtatttatgaggctctcaga 301
|||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 460 taaccaagattatggttacataataaatccaaggccaggcgtatttatgaggctctcaga 401
Query: 302 agctgcagtaacaatatcatttagaaaacatttatgctcccaagatgaaggcaatccctc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agctgcagtaacaatatcatttagaaaacatttatgctcccaagatgaaggcaatccctc 341
Query: 362 cccctcctttatttataaggcatgctgggtaattaagtgggcgctgggaaggaaggtggt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cccctcctttatttataaggcatgctgggtaattaagtgggcgctgggaaggaaggtggt 281
Query: 422 tgggagaagatggcctctaaataatcctgcctggtaaagccaccatctgttgttgtgcag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgggagaagatggcctctaaataatcctgcctggtaaagccaccatctgttgttgtgcag 221
Query: 482 tggggatagcccacata 498
||||||||||||||||
Sbjct: 220 cggggatagcccacata 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_e12.g1 MSMg01no365_e12.g1 CHROMAT_FILE:
MSMg01no365_e12.g1 PHD_FILE: MSMg01no365_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:44 2005
(534 letters)
>mm_chr9_49641018_49641956
Length = 939
Score = 938 bits (485), Expect = 0.0
Identities = 524/539 (97%), Gaps = 5/539 (0%)
Strand = Plus / Plus
Query: 1 tctcctagcagaatcctttctgataagcatcagccaaggatcttgttgcctgcccagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcctagcagaatcctttctgataagcatcagccaaggatcttgttgcctgcccagccc 260
Query: 61 cctccctccactgtccgaacactctgatcttctacgttgctgaagcgtgaggtaatgctt 120
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 cctccctccactgcccgaacactctgatcttctacgttgctgaagagtgaggtaatgctt 320
Query: 121 ttcctaaacttcaaggtatctgcacagcctaatgccatctttcaaaaaaaaa-ccatgtc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ttcctaaacttcaaggtatctgcacagcctaatgccatctttcaaaaaaaaaaccatgtc 380
Query: 180 atccactacttccacaaggctagttttgtattcctcttgagaggccaagaagagcctagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccactacttccacaaggctagttttgtattcctcttgagaggccaagaagagcctagt 440
Query: 240 attctggtagtaacgtagagcgatgaagcttcctgttacgctgacacatgaacacatgcg 299
| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 aacctggtagtaacggagagcgatgaagcttcctgttacgctgtcacatgaacacatgcg 500
Query: 300 ttaggtggttgtagcccagcatactgcttcccacttgctagataggatagttggtgttag 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 ttaggtggttgtagcccagcatactgcttcctacttgctagataggatagttggtgttag 560
Query: 360 gtttctttatccctcttgctcatctcctgtccaaactcatgcttcccagcacagcttttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttctttatccctcttgctcatctcctgtccaaactcatgcttcccagcacagcttttt 620
Query: 420 acttaaagaacacaacccattaacacgttcacaagaggtttagaaaaccagtaaaa---- 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttaaagaacacaacccattaacacgttcacaagaggtttagaaaaccagtaaaatgaa 680
Query: 476 cattggccctctctgtttctgggttttgaggggagggctttccgtctgagtggaccgct 534
|||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 681 cattggccctctctgtctctgggttttgaggggagggctttctgtctgactggaccgct 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 939
Length adjustment: 10
Effective length of query: 524
Effective length of database: 929
Effective search space: 486796
Effective search space used: 486796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
