BAC Information

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BAC

Clone NameMSMg01-365K03
Chromosome9 (Build37)
Map Location 109,777,632 - 109,778,015
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp
Downstream geneCdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365K03.T7 (MSMg01no365_k03.b1)MSMg01-365K03.TJ (MSMg01no365_k03.g1)
ACCAG473542AG473543
length742571
length of high quality
(start - end)
384 (41 - 424)201 (39 - 239)
definitionCHROMAT_FILE: MSMg01no365_k03.b1 PHD_FILE: MSMg01no365_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:11 2005CHROMAT_FILE: MSMg01no365_k03.g1 PHD_FILE: MSMg01no365_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCAATTTCGAAGCAAACTTCTCCTCGCTCCCGAATGACAGCTGAGCCGG
ACCAATGAGAAGGAAAGGAGGAAGCGTCTCGTGGGCCTCCTCGAGGTCAC
TCCCTCTCTCGGTGGGGGCGAAGCCTGAAGAGTTGGGAGGTGGCTGAAAT
GAGAAAGGAGTCAATGAAACTTTCTGTGGGGGCGCTAGTCCCTACCGAAA
GGCCCCGCTCTTTTTCAGTTGCATGCTGGGTAGTGTAGTTCCTACAGCGT
GTGCTACACACCTGTTTGATCTACTGAGCATAGTGCTGTGCATTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAGACAGAGAGACTAGGGAAG
GCCATCTGGACCAGGCGTTGGCTGTTCTCTAATTGTGGGGTACAGTACCA
TGGATCCTGGATCCCTCTTTTCCTTCACAGGACTTCAGGGTCTGATTTTG
TCTTTCTTTTTTTCTTTTTCGAGACTGGGTTTCTTTGTGTAGCCTTAGCT
GTCCTCGAACCCGTTTTGGATACTATTCTGGTCTCTAACTCCTATCGATT
TGCCTTTGCCTCTGTCCCTCGGAAGGTGATATTTAGGGATGTGTTCTCTT
TTTTGTTTCCGATTTTGTTTAATTGTTTTTTTTTTTTTTCGAATTTTGAA
TTTTTTTTTTAACTATTCCCTTGGTCGGTAAATGTTTCCCCC
GGGGCGCCTGTCGCACTTTAGGACTATAAAGACCGCGGATTCCTTATAAC
CCGAACAGGAATAGTGAACGGCTCATCGACTTTTAAAAATTGGCTATATA
ATCTCGTTCTTTAATATTCAAATAGTAATGGTTAGAAAATTTTGATATTT
TTAAGAATGTGCATGTCAATTGTAAAAAATTTGCTCTGGTGTCCTCAGTT
TCTACCTGTTTCCACATAATGGGGTTAATTCTTGAGGACTAACTTATCAT
GCTGAATAATGTCTATTCGATATAATANNAANTTTGGCCCGGGAAATTTA
AACTTTTCCGGGTTTAATTTCCCCCCCCCCCAAGAAGNNAGAAAAAAATA
ATCAATTTTTTTTTTGNNAATTAAAAANNNAATTAAATAAAAANNNATAA
TCTTTATTTTTTTTNNNNNNNAAGGGAGAAATGTNNNNAATTATANCNTT
AACACATCCTTTNNCACNACCTAGATTTGCTTTTTTTTTTTTGAATTCGC
TCGTTTTTTTTAAATTCGTGTGTTTCGCTTTTTGGTAGCAGTCTCTCTAG
ATCCCNNTAATTTATTGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_k03.b1 MSMg01no365_k03.b1 CHROMAT_FILE:
MSMg01no365_k03.b1 PHD_FILE: MSMg01no365_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:11 2005
         (384 letters)



>mm_chr9_109777514_109778297
          Length = 784

 Score =  685 bits (354), Expect = 0.0
 Identities = 376/386 (97%), Gaps = 7/386 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   cggaattcaccaatttc--gaagcaaacttctcctcgctcccgaatgacagctgagccgg 60
           |||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cggaattcaccaa--tcaggaagcaaacttctcctcgctcccgaatgacagctgagccgg 445

                                                                       
Query: 61  accaatgagaaggaaaggaggaagcgtctcgtgggcctcctcgaggtcactccctctctc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 accaatgagaaggaaaggaggaagcgtctcgtgggcctcctcgaggtcacgccctctctc 385

                                                                       
Query: 121 ggtgggggcgaagcctgaagagttgggaggtggctgaaatgagaaaggagtcaatgaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtgggggcgaagcctgaagagttgggaggtggctgaaatgagaaaggagtcaatgaaac 325

                                                                       
Query: 181 tttctgtgggggcgctagtccctaccgaaaggccccgctctttttcagttgcatgctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttctgtgggggcgctagtccctaccgaaaggccccgctctttttcagttgcatgctggg 265

                                                                       
Query: 241 tagtgtagttcctacagcgtgtgctacacacctgtttgatctactgagcatagtgctgtg 300
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 264 tagtgtagttcctacagcgtgtgctacacacctgtctgagctactgagcatagtgctgtg 205

                                                                       
Query: 301 ca---tttttttttttttttttttttttttttttttttttaggagacagagagactaggg 357
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cactttttttttttttttttttttttttttttttttttttaggagacagagagactaggg 145

                                     
Query: 358 aaggccatctggaccaggcgttggct 383
           ||||||||||||||||||||||||||
Sbjct: 144 aaggccatctggaccaggcgttggct 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)