Query= MSMg01no365_k20.b1 MSMg01no365_k20.b1 CHROMAT_FILE:
MSMg01no365_k20.b1 PHD_FILE: MSMg01no365_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:14 2005
(403 letters)
>mm_chr9_71492301_71493105
Length = 805
Score = 741 bits (383), Expect = 0.0
Identities = 399/405 (98%), Gaps = 2/405 (0%)
Strand = Plus / Plus
Query: 1 acatgtgtgtttctggtttagggtcattccactctcacaaattattcctctttagcaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgtgtgtttctggtttagggtcattccactctcacaaattattcctctttagcaatt 260
Query: 61 caggttttcctgtcatc--agaagtcctggtatttctttgtgtgggtttctctcaagtgt 118
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggttttcctgtcatctcagaagtcctggtatttctttgtgtgggtttctctcaagtgt 320
Query: 119 tgagtattaggcttgtaaatactcacccccagctggtaactgctttgggcagttgcagac 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagtattaggcttgtaaatactcacccccagctggtaactgctttgggcagttgcagac 380
Query: 179 agactatcttgggactgggaaatggcaatgaattggaccacagtttgctgatagctctgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 agactatcttgggactgggaaatggcaatgaattggaccacagtttgctgataactctgg 440
Query: 239 caatgatacatactcactcaggaagatgggccaggaatgaaactggactatgtggtttgg 298
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 441 caatgatacatacacactcaggaagatgggccaggaatgagactggactctgtggtttgg 500
Query: 299 tcagtggtccccgatgtgcagggtggtttggggtctacggcacagtgtggaacctgactg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagtggtccccgatgtgcagggtggtttggggtctacggcacagtgtggaacctgactg 560
Query: 359 gacagttggcagtcttggagcctttgtaggggaaccattacttaa 403
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacagttggcagtcttggagcctttgtaggggaaccattacttaa 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 805
Length adjustment: 9
Effective length of query: 394
Effective length of database: 796
Effective search space: 313624
Effective search space used: 313624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_k20.g1 MSMg01no365_k20.g1 CHROMAT_FILE:
MSMg01no365_k20.g1 PHD_FILE: MSMg01no365_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:14 2005
(408 letters)
>mm_chr9_71669987_71670794
Length = 808
Score = 774 bits (400), Expect = 0.0
Identities = 406/408 (99%)
Strand = Plus / Minus
Query: 1 tccccattccctagaagaaggcctgaacacttttgtctggggtcactatttaaaaaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tccccattccctagaagaaggcctgaacacttttgtctggggtcactatttaaaaaaact 710
Query: 61 ggttgacccctgcatgctggttgtttctgcagaataagcactctttgtgttgcatactat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ggttgacccctgcatgctggttgtttctgcagaataagcactctttgtgttgcatactat 650
Query: 121 ctgagtctggggtctttcttcagcgatttcagacccttatagtataacctactctgtacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ctgagtctggggtctttcttcagcgatttcagacccttatagtataacctactctgtacc 590
Query: 181 aggcagaggcctccccactgaggttcaggaatggggggaggaacttcaaaaaaagcttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aggcagaggcctccccactgaggttcaggaatggggggaggaacttcaaaaaaagcttta 530
Query: 241 aataactttcaacatagttggtgacacaggccagtacccaaggcagtctgtgccagggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aataactttcaacatagttggtgacacaggccagtacccaaggcagtctgtgccagggct 470
Query: 301 ggtgagctctgcttagccagagaggaaagacccactcttcaaattatgggtggcttatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ggtgagctctgcttagccagagaggaaagacccactcttcaaattatgggtggcttatgt 410
Query: 361 gaaccactgacctcaaaacctaaacctcaggtcaacatctgcccagtg 408
||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 409 gaaccactgacctcaaaacctaagcctcaggtcaacagctgcccagtg 362
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
