Query= MSMg01no366_c01.b1 MSMg01no366_c01.b1 CHROMAT_FILE:
MSMg01no366_c01.b1 PHD_FILE: MSMg01no366_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:52 2005
(408 letters)
>mm_chr9_58443646_58444453
Length = 808
Score = 671 bits (347), Expect = 0.0
Identities = 381/405 (94%), Gaps = 22/405 (5%)
Strand = Plus / Minus
Query: 4 ggaattctttctaccttgcatattcttttttgttttgttttgttttgttttgttttttga 63
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 780 ggaattctttctaccttg-atattctt-----ttttgttttgttttgttttgttttttga 727
Query: 64 gacagggtttctctgtgtagccctggctgtcctggaactcactctttagaccaggctggc 123
|||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 726 gacagggtttctctgtgtagccctggctctcttggaactcactctttag----------- 678
Query: 124 ctcgaactcagaaatccgcctgcctctgcctcccaggtactgggatcaaaggcgtgcgcc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 -----actcagaaatccgcctgcctctgcctcccaggtactgggatcaaaggcgtgcgcc 623
Query: 184 acccctgcccagctctgccttgatattcttagttccatcaggaattgttctttgtgccta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 acccctgcccagctctgccttgatattcttagttccatcaggaattgttctttgtgccta 563
Query: 244 ggcctcgaagactagctgagctgtttctgagaaatatgaacattatgaccctgtgaaaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggcctcgaagactagctgagctgtttctgagaaatatgaacattatgaccctgtgaaaat 503
Query: 304 taaaagattataaaaacatgttagaaaaatatcaaaaagaaaccattaaacgccacccct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taaaagattataaaaacatgttagaaaaatatcaaaaagaaaccattaaacgccacccct 443
Query: 364 gcccagctctgccttgatattcttagttccatcaggaattaatgt 408
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcccagctctgccttgatattcttagttccatcaggaattaatgt 398
Score = 273 bits (141), Expect = 2e-77
Identities = 162/177 (91%), Gaps = 14/177 (7%)
Strand = Plus / Minus
Query: 180 cgccacccctgcccagctctgccttgatattcttagttccatcaggaat---tgttcttt 236
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 452 cgccacccctgcccagctctgccttgatattcttagttccatcaggaattaatgttcttt 393
Query: 237 gtgcctaggcctcgaagactagctgagctgtttctgagaaatatgaacattatgaccctg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtgcctaggcctcgaagactagctgagctgtttctgagaaatatgaacattatgaccctg 333
Query: 297 tgaaaattaaaagattataaaaacatgttagaaaaatatcaaaaagaaaccattaaa 353
||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 332 tgagaattaaaagat-----------gttagaaaaatatcaaaaagaaaccattaaa 287
Score = 195 bits (101), Expect = 3e-54
Identities = 136/151 (90%), Gaps = 7/151 (4%)
Strand = Plus / Minus
Query: 37 tttgttttgttttgttttgtttttt-gagacagggtttctctgtgtagccctggctgtcc 95
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 232 tttgttttgtttttttttgttttttcgagacagggtttctctgtgtagccctagctgtcc 173
Query: 96 tggaactcactctttagaccaggctggcctcgaactcagaaatccgcctgcctctgcctc 155
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 172 tggaactcactctatagaccaggctggc------ctcagaaatccgcctgcctctgcctc 119
Query: 156 ccaggtactgggatcaaaggcgtgcgccacc 186
||| || |||||| |||||| |||||||||
Sbjct: 118 ccaagtggtgggattaaaggcatgcgccacc 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 4
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_c01.g1 MSMg01no366_c01.g1 CHROMAT_FILE:
MSMg01no366_c01.g1 PHD_FILE: MSMg01no366_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:52 2005
(389 letters)
>mm_chr9_58246023_58246811
Length = 789
Score = 737 bits (381), Expect = 0.0
Identities = 387/389 (99%)
Strand = Plus / Plus
Query: 1 caaatggagagattagataactttccaaggtcacctggttggttggttagttaaggaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatggagagattagataactttccaaggtcacctggttggttggttagttaaggaatt 260
Query: 61 aaggtccaagtcccagtatgcttacctttagagcccattcccctacacagatgaccctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggtccaagtcccagtatgcttacctttagagcccattcccctacacagatgaccctag 320
Query: 121 gaactttctagacataaagctaatcattattatacgagtcaatcttcctggagacatgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaactttctagacataaagctaatcattattatacgagtcaatcttcctggagacatgag 380
Query: 181 gaaatagatggggagggtgtatttcctctcccttggtatgcctaggtttgtatagccagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatagatggggagggtgtatttcctctcccttggtatgcctaggtttgtatagccagc 440
Query: 241 tagtgagcggaggtgttagcacgaagcttaatcccagagggccaagactgtagcgatgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtgagcggaggtgttagcacgaagcttaatcccagagggccaagactgtagcgatgcc 500
Query: 301 ataaggtagtcaaacggaagctgatgttaagatgattagcatgcagcgttcatccaagca 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ataaggtagtcaaacggaagctgatgttaagatgattagcatgcagtgttcatccaagca 560
Query: 361 tggcctcagaccgaggtttatgtgagagg 389
|||||||||||||||| ||||||||||||
Sbjct: 561 tggcctcagaccgaggcttatgtgagagg 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
