Query= MSMg01no366_d04.b1 MSMg01no366_d04.b1 CHROMAT_FILE:
MSMg01no366_d04.b1 PHD_FILE: MSMg01no366_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:58 2005
(331 letters)
>mm_chr9_77337094_77337824
Length = 731
Score = 441 bits (228), Expect = e-128
Identities = 258/268 (96%), Gaps = 2/268 (0%)
Strand = Plus / Minus
Query: 6 gaattcaggagttggccgaggacccagctgagatgcagatacgacaaacgccacacacgg 65
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaattcaggagttgggtgaggacccagctgagatgcagatacgacaaacgccacacacgg 403
Query: 66 tcacaggcttgccctctatatcttaccttcacctcaattctgtgacttgggggtaccatt 125
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcacaggcttgccctttatatcttaccttcacctcaattctgtgacttgggggtaccatt 343
Query: 126 gtctcaggatgggtaaggaaactgaggtttgaagatattaccacgtgccccaaattactc 185
|| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 342 gtttcaggatgggtaaggaaaccgaggtttgaagatattaccacgtaccccaaattactc 283
Query: 186 ctcatttgtggtggaactgaaacacgccaccac-gaaagagtggcactcttcattgtttt 244
|||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 282 ctcatttgtggtggaactgaaacacggcaccacag-aagagtggcactcttcattgtttt 224
Query: 245 gtgattgaaggtaataaagtcaaggcta 272
||||| ||||||||||||||||||||||
Sbjct: 223 gtgatggaaggtaataaagtcaaggcta 196
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space: 232484
Effective search space used: 232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_d04.g1 MSMg01no366_d04.g1 CHROMAT_FILE:
MSMg01no366_d04.g1 PHD_FILE: MSMg01no366_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:58 2005
(456 letters)
>mm_chr9_77159265_77160123
Length = 859
Score = 849 bits (439), Expect = 0.0
Identities = 453/459 (98%), Gaps = 3/459 (0%)
Strand = Plus / Plus
Query: 1 ttattattctcccaggaggtttgaaaggcagagaaatataattattttctgatatacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattattctcccaggaggtttgaaaggcagagaaatataattattttctgatatacact 260
Query: 61 gaaaggatcttgtccattctgactctgttaccctaggaaataactgttacctgactgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaggatcttgtccattctgactctgttaccctaggaaataactgttacctgactgttt 320
Query: 121 tgaaccacaccaaaaaaaaaaa---ttcatatagtagaacccattggaaggcttaataca 177
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaccacaccaaaaaaaaaaaaaattcatatagtagaacccattggaaggcttaatacg 380
Query: 178 taagcatgagacccagtaggtcaagcttcaagtctcactgctgcagattctagctctgtg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagcatgagacccagtaggtcaagcttcaagtctcactgctgcagattctagctctgtg 440
Query: 238 tccctggcatgtaaggtcaacacagagaaagcagggcataaaacaccaaaacatcatgac 297
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tccctggcatgtaaggtcaacacagagaaaccagggcataaaacaccaaaacatcatgac 500
Query: 298 agcagtaagtcccaggcaaagcacgtgactctgtcaccgtagctggaatctaacaataca 357
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 agcagtaagtcccaggcaaagcacgtgactctgtcgccgtagctggaatctaacaataca 560
Query: 358 gtccacgtcctcctctatttccagttagaccagccagtgagttcctttcgaatgaagcca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtccacgtcctcctctatttccagttagaccagccagtgagttcctttcgaatgaagcca 620
Query: 418 tttcagttagatttctgctatcaacaaagaggtgtagga 456
|||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcagttagatttctgctatcaacaaagaggtgtagga 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 859
Length adjustment: 10
Effective length of query: 446
Effective length of database: 849
Effective search space: 378654
Effective search space used: 378654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
