Query= MSMg01no366_d18.b1 MSMg01no366_d18.b1 CHROMAT_FILE:
MSMg01no366_d18.b1 PHD_FILE: MSMg01no366_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:01 2005
(560 letters)
>mm_chr9_95561840_95562805
Length = 966
Score = 984 bits (509), Expect = 0.0
Identities = 547/563 (97%), Gaps = 6/563 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaagataatctcaggcaaaaatgtctcccagcaagagagagtaggttagggaac 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagataagctgaggcaaaaatgtctcccagcaagagagagtaggttagggaac 263
Query: 64 tcaaactggaggtagacaaagctaggtaggacctttgtggcagccaccctaattgtgttt 123
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaaactggaggtagacaaggctaggtaggacctttgtggcagccaccctaattgtgttt 323
Query: 124 ggatattgtaacatatgcctatatcatcctaaactcagcattttcagagattgaaactat 183
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 ggatactgtaacatatgcctttatcagcctaaactcagcattttcagagattgaaactat 383
Query: 184 ggtgcccttggtctctctgcatgccttccaagacgaaataacacagttcctcttctcccc 243
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 gatgcccttggtctctctgcatgccttccaagacgaaataacatagttcctcttctcccc 443
Query: 244 actgcttttctatttctggtggtgcccgtggggctgctacctccagggtatccttgatga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actgcttttctatttctggtggtgcccgtggggctgctacctccagggtatccttgatga 503
Query: 304 agt------tacctgatctattgcaaccctaaataagctcagcttcccctataatgacca 357
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtgcctcttacctgatctattgcaaccctaaataagctcagcttcccctataatgacca 563
Query: 358 cggggaactcaaaataacaatgtcgtcattctttctttcttttcatttgtcatgtgtgta 417
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagggaactcaaaataacaacgtcgtcattctttctttcttttcatttgtcatgtgtgta 623
Query: 418 tatacacctaccaaattggtacgaattggcattcaatgtagaagaaagtagggaaaacaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tatacacctaccaaattggtacgaattggcattcaatgtagaagaaagtagggaaaacaa 683
Query: 478 gaatgaatacaatgtccttgtgttaatattctgttaaaatgccagggctgaggagatgcc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaatgaatacaatgtccttgtgttaatattctgttaaaatgccagggctgaggagatgcc 743
Query: 538 tctgtgtgtaaaagcactgtctg 560
|||||||||||||||||||||||
Sbjct: 744 tctgtgtgtaaaagcactgtctg 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 966
Length adjustment: 10
Effective length of query: 550
Effective length of database: 956
Effective search space: 525800
Effective search space used: 525800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_d18.g1 MSMg01no366_d18.g1 CHROMAT_FILE:
MSMg01no366_d18.g1 PHD_FILE: MSMg01no366_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:01 2005
(540 letters)
>mm_chr9_95709376_95710314
Length = 939
Score = 816 bits (422), Expect = 0.0
Identities = 425/426 (99%), Gaps = 1/426 (0%)
Strand = Plus / Minus
Query: 1 actatacagctgactttgaacttctgtggatagtttcacatggcctcatgcgtgtcctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 actatacagctgactttgaacttctgtggatagtttcacatggcctcatgcgtgtcctga 366
Query: 61 tcatccttccaaggagggggaaaacagaagaaatacttgcagataagagctgaaaaaaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 365 tcatccttccaaggagggggaaaacagaagaaatacttgcagataagagctg-aaaaaaa 307
Query: 121 aaaaaacaggttgaaaactctatagtttcagcttcatagatctgagaaactcaatgatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaaaacaggttgaaaactctatagtttcagcttcatagatctgagaaactcaatgatct 247
Query: 181 gcaataaaaaagatagagaaaaatgatattaaggcatactgtaattaaataacatcaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gcaataaaaaagatagagaaaaatgatattaaggcatactgtaattaaataacatcaagg 187
Query: 241 cataccatattcaaattgtttaaaaccactgataagagtaaaatcttaaaataacccaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cataccatattcaaattgtttaaaaccactgataagagtaaaatcttaaaataacccaat 127
Query: 301 gagaaaaggagatgctttgtgtagaagaagaaaggtgacaatgaaacagatgtgctgttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gagaaaaggagatgctttgtgtagaagaagaaaggtgacaatgaaacagatgtgctgttg 67
Query: 361 gggacagtgcaggcaggccatgcaggagcgccattaagagacaagcagtcaactcatatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gggacagtgcaggcaggccatgcaggagcgccattaagagacaagcagtcaactcatatc 7
Query: 421 tatacc 426
||||||
Sbjct: 6 tatacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 939
Length adjustment: 10
Effective length of query: 530
Effective length of database: 929
Effective search space: 492370
Effective search space used: 492370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
