Query= MSMg01no366_j07.b1 MSMg01no366_j07.b1 CHROMAT_FILE:
MSMg01no366_j07.b1 PHD_FILE: MSMg01no366_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:28 2005
(488 letters)
>mm_chr9_38473187_38474074
Length = 888
Score = 793 bits (410), Expect = 0.0
Identities = 452/466 (96%)
Strand = Plus / Plus
Query: 23 agacatttactgagtccattcttctctgagagaatctgtggacacagaaagtagagctat 82
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 223 agacatttactgagtccatttttctctgagagaatctgtggacacagaaagtagagctat 282
Query: 83 gttagaggataatccacactccatgctggattcttctcccctgtgaagtgtatgttgcta 142
|||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 283 gttagaagacaatccacactccatgctggatccttctcccctgtgaagtgtatgttggta 342
Query: 143 gtgtttattctagtcatggctatgtttacagaatcagctggtgaatgttcaaaaaattat 202
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 343 gtgtttattctagtcatggctatgtttacagaatcagctggtgagcgttcaaaaaattat 402
Query: 203 cttaagtctgatatcaaattgttcaaatttttagtattatttataaattatgacaaaata 262
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 403 cttaagtctgatatcaaattgttcaaaattttagtattatttataaaatatgacaaaata 462
Query: 263 aaggagaagacctcactatttagattcagtcttcccccacctcctgtcttctttcactag 322
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaggagaaaacctcactaaaaagattcagtcttcccccacctcctgtcttctttcactag 522
Query: 323 agccttcccacaacaatgaaaataggaagcagctacctggaacatatttattgtttgcta 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agccttcccacaacaatgaaaataggaagcagctacctggaacatatttattgtttgcta 582
Query: 383 ctgaacacttaccttggctgtagtatgaatgaaaactatatccctattctaaaactaaag 442
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctgaacactcaccttggctgtagtatgaatgaaaactatatccctattctaaaactaaag 642
Query: 443 aaaaaaagtgaatcatagaaagaatgtctcctgccgccatataaca 488
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aaaaaaagtgaatcatagaaagaatgtctcctgccgccatataaca 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_j07.g1 MSMg01no366_j07.g1 CHROMAT_FILE:
MSMg01no366_j07.g1 PHD_FILE: MSMg01no366_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:28 2005
(388 letters)
>mm_chr9_38628948_38629734
Length = 787
Score = 708 bits (366), Expect = 0.0
Identities = 383/389 (98%), Gaps = 3/389 (0%)
Strand = Plus / Minus
Query: 1 tttatgaatatattaaaattactgtttcatatagtggcttttgagaggtcatatatgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tttatgaatatattaaaattactgtttcatatagtggcttttgagaggtcatatatgaat 371
Query: 61 gagacaaagcatggagctttggtagtttgtctctcaaacttctgaaagggtttcttctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gagacaaagcatggagctttggtagtttgtctctcaaacttctgaaagggtttcttctat 311
Query: 121 aaggaatccaagtcagattcaaaaacttccaattctaatgctcaaatgatacgaaaatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaggaatccaagtcagattcaaaaacttccaattctaatgctcaaatgatacgaaaatta 251
Query: 181 aaatattctttattccttgttttttttttaatctagttttgttttagtttaattttataa 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaatattctttattccttg-tttttttttaatctagttttgttttagtttaattttataa 192
Query: 241 ttttcaaacttgcttggaggaaggattttgaatgtacttctaataaataaatgatagcga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 191 ttttcaaacttgcttggaggaaggattttgaatgtacttctaataaataaatgatagcta 132
Query: 301 tttgaggtggtgtgttggggttagttttgtgcactgtgtatnaaaaatctgaa-ttctgt 359
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct: 131 tttgaggtggtgtgttggggttagttttgtgcactgtgtattaagaatct-aagttctgt 73
Query: 360 tctccagtccaggtggcaatctgatcttg 388
|||||||||||||||||||||||||||||
Sbjct: 72 tctccagtccaggtggcaatctgatcttg 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 787
Length adjustment: 9
Effective length of query: 379
Effective length of database: 778
Effective search space: 294862
Effective search space used: 294862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
