Query= MSMg01no366_m02.b1 MSMg01no366_m02.b1 CHROMAT_FILE:
MSMg01no366_m02.b1 PHD_FILE: MSMg01no366_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:41 2005
(461 letters)
>mm_chr9_43775767_43776623
Length = 857
Score = 812 bits (420), Expect = 0.0
Identities = 450/462 (97%), Gaps = 6/462 (1%)
Strand = Plus / Plus
Query: 1 gaggtgagaagaagtcagaggagaggttctcagactcagaaagtctcactaaactcttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggtgagaagaagtcagaggagaggttctcagactcagaaagtctcactaaactcttgg 260
Query: 61 cgtggaaatggccaaagcagaagagagaagaggacaaaggccttggacccatcaggagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtggaaatggccaaagcagaagagagaagaggacaaaggccttggacccatcaggagac 320
Query: 121 acactcaccattagaaagcaagccgtgtctacctgcctggcgtgatggtttccataccta 180
| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 321 a----caccattagaaagtaagccatgtctacctgcctggcgtgatggtttccacaccta 376
Query: 181 ggacatagttggaacttaatatgcatatctgataaagaaatgattaaccaaattagcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggacatagttggaacttaatatgcatatctgataaagaaatgattaaccaaattagcaaa 436
Query: 241 caacgaacactcatgtcttcaaaacatactaaggattttctagcatttgaccttagggga 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caacgaacactcaggtcttcaaaacatactaaggattttctagcatttgaccttaggggg 496
Query: 301 aaaagtaaccgtgattcattcgtccacacatccacat-aactcgctcactcgctccataa 359
||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 497 aaa-gtaaccgtgattcattcgtccacacattcacattaactcgctcactcgctccataa 555
Query: 360 tgctggtccaccccttcgcagcaatccctaccatggatgaattggtgaacgtgatctcca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgctggtccaccccttcgcagcaatccctaccatggatgaattggtgaacgtgatctcca 615
Query: 420 agttcccggcgtgttcattgtgctggctggaggcgagctgct 461
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agttcccggcgtgttcattgtgctggctggaggcgagctgct 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 857
Length adjustment: 10
Effective length of query: 451
Effective length of database: 847
Effective search space: 381997
Effective search space used: 381997
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_m02.g1 MSMg01no366_m02.g1 CHROMAT_FILE:
MSMg01no366_m02.g1 PHD_FILE: MSMg01no366_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:41 2005
(483 letters)
>mm_chr9_43898845_43899726
Length = 882
Score = 851 bits (440), Expect = 0.0
Identities = 456/464 (98%), Gaps = 6/464 (1%)
Strand = Plus / Minus
Query: 1 ctgagcatcctgctgactgaatgcaaacaaaagtgagtgggagagcagcgcccaccagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctgagcatcctgctgactgaatgcaaacaaaagtgagtgggagagcagcgcccaccagac 407
Query: 61 ctcacttgtgctgccagccaccttggggagggcacgcatgccaggcccttacttatagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ctcacttgtgctgccagccaccttggggagggcacgcatgccaggcccttacttatagcc 347
Query: 121 catgaagcgtggcgcatatctctggatctgggtcttgaactcagatgggctcaccacatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 catgaagcgtggcgcatatctctggatctgggtcttgaactcagatgggctcaccacatc 287
Query: 181 attgggggacgacgtccatatggtctggattagttttgcaaactctgttaggagccatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 attgggggacgacgtccatatggtctggattagttttgcaaactctgttaggagccatta 227
Query: 241 gaaagggtgtattaacaggtgagattattcaaggtagagttcctctgtgtagcaatggct 300
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gaaagggtg-aagaacaggtgagattattcaaggtagagttcctctgtgtagcaatggct 168
Query: 301 gtaactaactccatagaccaggctggcctggaatccagagatctgcctgcctccacctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gtaactaactccatagaccaggctggcctggaatccagagatctgcctgcctccacctcc 108
Query: 361 tgagccagccctcggattaaaagtgtgcatcacaactaccctgctgagatattttctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tgagccagccctcggattaaaagtgtgcatcacaactaccctgctgagatattttctttt 48
Query: 421 ttaaaaag-----ttattttaatatgtgtgtgtatatgtatgta 459
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 47 ttaaaaagttattttattttaatatgtgtgtgtatatgtatgta 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space: 412456
Effective search space used: 412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
