Query= MSMg01no367_l19.b1 MSMg01no367_l19.b1 CHROMAT_FILE:
MSMg01no367_l19.b1 PHD_FILE: MSMg01no367_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:59 2005
(483 letters)
>mm_chr9_73288487_73289368
Length = 882
Score = 874 bits (452), Expect = 0.0
Identities = 473/480 (98%), Gaps = 1/480 (0%)
Strand = Plus / Minus
Query: 4 ggaattcatcacattgctaaagccttcagggggtcatcaataaaatgctggaaagtctac 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ggaattcatcacagggataaagccttcagggggtcatcaataaaatgctggaaagtctac 623
Query: 64 tggattttatagctgtaatatgtattccattaacttgtctactgccaatcctaaacaaat 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tggattttatagctataatatgtattccattaacttgtctactgccaatcctaaacaaat 563
Query: 124 aaacaccctctaaagttatagatatatactagggttttcttataccactaattatatgac 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 562 aaacaccctctaaagttatagatatatactagggtttt-ttataccactaattatatgac 504
Query: 184 tagatgtaatatcctagatttagacctagccaactttagcatccacagctttaatgtctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tagatgtaatatcctagatttagacctagccaactttagcatccacagctttaatgtctg 444
Query: 244 atactgctacttagttcagccacgcccagaaacccacccattttcaagtctaacactgtc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atactgctacttagttcagccacgcccagaaacccacccattttcaagtctaacactgtc 384
Query: 304 acacacacccttccccttgtgaaagcttatgcatttatgcacaaacatctccaatttcca 363
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 383 acacacacccttccccttgtgaaatcttatgcatttatgcacaaacatctccaatttcca 324
Query: 364 aactccttctcctgggacctttagaaacatgtcttggtatcagctacttcctccttgccc 423
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaatccttctcctgggacctttagaaacatgtcttggtatcagctacttcctccttgccc 264
Query: 424 gtgtttaaagaaggtaattcaccattccgaatattaatttcatcatcaatcaatgagaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtgtttaaagaaggtaattcaccattccgaatattaatttcatcatcaatcaatgagaaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space: 412456
Effective search space used: 412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_l19.g1 MSMg01no367_l19.g1 CHROMAT_FILE:
MSMg01no367_l19.g1 PHD_FILE: MSMg01no367_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:59 2005
(425 letters)
>mm_chr9_73090229_73091053
Length = 825
Score = 772 bits (399), Expect = 0.0
Identities = 417/423 (98%)
Strand = Plus / Plus
Query: 1 cacatggtgcagtgaaccagtttcagtgagaggtgggcaaaagggaagaggcatgtctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatggtgcagtgaaccagtttcagtgagaggtgggcaaaagggaagaggcatgtctag 260
Query: 61 aggcttctgtgcattggagtgtagctgacagggagtgttcttgcatgtggtaactgattc 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aggcttctgtgcattggagtgtagctgacagggagtgttcttgcgtgtggtaactgattc 320
Query: 121 agtcaggagaaaagaccttaatggggtcagagctggggaactcagcagccagcagccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcaggagaaaagaccttaatggggtcagagctggggaactcagcagccagcagccaga 380
Query: 181 ctgtgtgtgctagagagcagggtatggtaattattaaatatgcttgtccataaggatgtg 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgtgtgtgctagagagcagggtatggtaattattaaatatgcttgtccataaggatgtg 440
Query: 241 ccctgaagcctaactaaatgtgatctagtttattagacagggacacaccttatttgaaca 300
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgcagccaaactaaatgtgatctagtttattagacagggacacaccttatttgaaca 500
Query: 301 atgagatgctgtgggaaaagccagtttgctagtgggaagttactagcattccaggctaag 360
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 501 atgagatgctgtgggaaaagccagtttgccagtgggaagttaccagcattccaggctaag 560
Query: 361 catcatgtacttgagttgtttccattgggggataaggagatgggtagaattttctttcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcatgtacttgagttgtttccattgggggataaggagatgggtagaattttctttcaa 620
Query: 421 gcc 423
|||
Sbjct: 621 gcc 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
