BAC Information

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BAC

Clone NameMSMg01-367O19
Chromosome9 (Build37)
Map Location 52,233,665 - 52,404,539
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367O19.T7 (MSMg01no367_o19.b1)MSMg01-367O19.TJ (MSMg01no367_o19.g1)
ACCAG475275AG475276
length748763
length of high quality
(start - end)
482 (32 - 513)525 (77 - 601)
definitionCHROMAT_FILE: MSMg01no367_o19.b1 PHD_FILE: MSMg01no367_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:13 2005CHROMAT_FILE: MSMg01no367_o19.g1 PHD_FILE: MSMg01no367_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,404,076 - 52,404,539)(52,233,665 - 52,234,189)
sequence
GCGGCCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCCATGAT
TTATCCTTTCTAACATGGACTGCAGGTGCATGGTGACAACTTTGCTGATG
TGGGGGTCATTGTAAAAGAGCAGATGAGGCAGGCAAGAAGCTAAACAAGT
TCCATTTTCTCAGTGTGGAAACTAATCACTGGCTGTTTGTTTTAATCAGC
TATATTTGACAATTGTTTTATGCAATTGTTTGAAGAACTGCACACATATG
TGATGATAAAGATGAAGCATTTCAAGTGTTTTCTGGTCTGCACCACTGCA
GTTCTAATGTGGTTTAGTAATCCCATTCTTTATCTTTTCTCATAGGTTTC
TGATGGTCAAGGAAGAAGTTCCCCCTTTCCCTCCTAGAAGTGAGGAAATG
TTTATTCAAATGATATCACCTATACTGGTTTTCTTTAGAGATTTTTAGGC
CATTGATTAAATTAAGAGTATTAACATTTCACAGTGTTAAAGGCAGGGGC
TGCATACCTTGGAGAGTCACATGGTGGTAATGGTGTAAACTTGCCTTAGC
ATGCTCATGTGACTTTGAATATATTCCGATCATTGTGAAAAATGTTTAAT
CCATGACTTGTCTGTATGGCTTATTCCTGGGTCCTAACGAACCTTATGCT
TATGACTTCCCCCTTTCTATGATTGTGAATATTTATTTCACTAATTTCTG
GTCACAATTTTTAATCGTTAACCTTCTCTTTTGCCTAAGGTAGCTAAT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTACATGTCAAGGCAGCTCCTGC
TGAGCTTCCGATATGGCACTGGGCTCATGGGGGACACAAAGATGAACGCC
ATGGCCTCCAGCAGAGTGAATCTGATGGGCCAGAGACACAGCCAAAAATG
AAACAGAGTGGAGTAATTTCTGCAACAGAGGCACAGTGTGGGACCTCTGG
CAAGCAGAGGCTGATAGATAATTTTTTTTTTAGGAGACTCAGAGGGCTAA
GCAAAGTGGTGTGCACATGATACTGGAGACTGGAGAACCTGGACATGACG
TTGCTTACCTGGGCACAGTGGCTGGGAACTCAGACTCTGTCTTTAACCAA
TTGCGTTAATGTCCTCTTCAATCCACTCACGGCTTTAGGACCTTGCTTCT
GGTATGACTGAACCTCCATTTCAATATTTATAGAACTGAAATAATAAGAG
TGCCTACCTGATGCTGGGAGAGTTGCCCACAAAGTTAGTATAAAGTAAGG
ACTCAATAGGTGGTAGCCATTGATTATTTTTGGTCAGGCCATTTGTGGGA
GAGATGGTTGTTGGGCAGGTATAGATCATTCAGGGTCCAGGATGAGTAAG
AAGAAAGACTCTTATATATTTTTTGCCTCAGAGAGCAACAAATGGGGTTT
GGTTTGAGTCCATATATTTGCCCAATGTTTTTGTATATATTGCTTGACCC
TGTTCCCTTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_o19.b1 MSMg01no367_o19.b1 CHROMAT_FILE:
MSMg01no367_o19.b1 PHD_FILE: MSMg01no367_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:13 2005
         (482 letters)



>mm_chr9_52403937_52404820
          Length = 884

 Score =  824 bits (426), Expect = 0.0
 Identities = 458/478 (95%), Gaps = 17/478 (3%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattccatg---atttatcctttctaacatggactgcaggtgcatggtgacaactttgc 64
           ||||||||||   |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gaattccatgaaaa--tatcctttctaacatggactgcaggtgcatggtgacaactttgc 546

                                                                       
Query: 65  tgatgtgggggtcattgtaaaagagcagatgaggcaggcaagaagctaaacaagttccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 545 tgatgtgggggtcattgtaaaagagcagatgaggcaggcaagaagctaaacgagttccat 486

                                                                       
Query: 125 tttctcagtgtggaaactaatcactggctgtttgttttaatcagctatatttgacaattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 485 tttctcagtgtggaaactaatcactggctgtttgttttaatcagctacatttgacaattg 426

                                                                       
Query: 185 ttttatgcaattgtttgaagaactgcacacatatgtgatgataaagatgaagcatttcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttttatgcaattgtttgaagaactgcacacatatgtgatgataaagatgaagcatttcaa 366

                                                                       
Query: 245 gtgttttctggtctgcaccactgcagttctaatgtggtttagtaatcccattctttatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtgttttctggtctgcaccactgcagttctaatgtggtttagtaatcccattctttatct 306

                                                                       
Query: 305 tttctcataggtttctgatggtcaaggaagaagttccccctttccctcctagaagtgagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tttctcataggtttctgatggtcaaggaagaagttccccctttccctcctagaagtgagg 246

                                                                       
Query: 365 aaatgtttattcaaatgatatcacctatactggttttctttagagatttttaggccattg 424
           |||||||||||||||||||||||||||||||||            |||||||||||||||
Sbjct: 245 aaatgtttattcaaatgatatcacctatactgg------------atttttaggccattg 198

                                                                     
Query: 425 attaaattaagagtattaacatttcacagtgttaaaggcaggggctgcataccttgga 482
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 attaaattaagagtgttaacatttcacagtgttaaaggcaggggctgcataccttgga 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 884
Length adjustment: 10
Effective length of query: 472
Effective length of database: 874
Effective search space:   412528
Effective search space used:   412528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no367_o19.g1 MSMg01no367_o19.g1 CHROMAT_FILE:
MSMg01no367_o19.g1 PHD_FILE: MSMg01no367_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:13 2005
         (525 letters)



>mm_chr9_52233465_52234389
          Length = 925

 Score =  901 bits (466), Expect = 0.0
 Identities = 511/526 (97%), Gaps = 2/526 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtacatgtcaaggcagctcctgctgagcttccgatatggcactgggctcatgggggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtacatgtcaaggcagctcctgctgagcttccgatatggcactgggctcatgggggaca 260

                                                                       
Query: 61  caaagatgaacgccatggcctccagcagagtgaatctgatgggccagagacacagccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagatgaacgccatggcctccagcagagtgaatctgatgggccagagacacagccaaa 320

                                                                       
Query: 121 aatgaaacagagtggagtaatttctgcaacagaggcacagtgtgggacctctggcaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaaacagagtggagtaatttctgcaacagaggcacagtgtgggacctctggcaagca 380

                                                                       
Query: 181 gaggctgatagataattttttttt-taggagactcagagggctaagcaaagtggtgtgca 239
           ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggctgatggata-tttttttttctaggagactcagagggctaagcaaagtggtgtgca 439

                                                                       
Query: 240 catgatactggagactggagaacctggacatgacgttgcttacctgggcacagtggctgg 299
           ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||
Sbjct: 440 catgatactggagactggagaacctgggcatgacattgctcacctgggcacagtggctgg 499

                                                                       
Query: 300 gaactcagactctgtctttaaccaattgcgttaatgtcctcttcaatccactcacggctt 359
           ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |||||
Sbjct: 500 gaactcagactctgtctttaaccaattgcattaatgttctcttcagtccactcatggctt 559

                                                                       
Query: 360 taggaccttgcttctggtatgactgaacctccatttcaatatttatagaactgaaataat 419
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 560 taggaccttgcttctggtatgactgaatctccatttcaatatttatagaactgaaataat 619

                                                                       
Query: 420 aagagtgcctacctgatgctgggagagttgcccacaaagttagtataaagtaaggactca 479
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 620 aagagtgcctacctgatgctgggagagttgcccacaaagttaatataaagtaaggactca 679

                                                         
Query: 480 ataggtggtagccattgattatttttggtcaggccatttgtgggag 525
           ||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atagacagtagccattgattatttttggtcaggccatttgtgggag 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)