Query= MSMg01no367_o19.b1 MSMg01no367_o19.b1 CHROMAT_FILE:
MSMg01no367_o19.b1 PHD_FILE: MSMg01no367_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:13 2005
(482 letters)
>mm_chr9_52403937_52404820
Length = 884
Score = 824 bits (426), Expect = 0.0
Identities = 458/478 (95%), Gaps = 17/478 (3%)
Strand = Plus / Minus
Query: 8 gaattccatg---atttatcctttctaacatggactgcaggtgcatggtgacaactttgc 64
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gaattccatgaaaa--tatcctttctaacatggactgcaggtgcatggtgacaactttgc 546
Query: 65 tgatgtgggggtcattgtaaaagagcagatgaggcaggcaagaagctaaacaagttccat 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 545 tgatgtgggggtcattgtaaaagagcagatgaggcaggcaagaagctaaacgagttccat 486
Query: 125 tttctcagtgtggaaactaatcactggctgtttgttttaatcagctatatttgacaattg 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 485 tttctcagtgtggaaactaatcactggctgtttgttttaatcagctacatttgacaattg 426
Query: 185 ttttatgcaattgtttgaagaactgcacacatatgtgatgataaagatgaagcatttcaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttttatgcaattgtttgaagaactgcacacatatgtgatgataaagatgaagcatttcaa 366
Query: 245 gtgttttctggtctgcaccactgcagttctaatgtggtttagtaatcccattctttatct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtgttttctggtctgcaccactgcagttctaatgtggtttagtaatcccattctttatct 306
Query: 305 tttctcataggtttctgatggtcaaggaagaagttccccctttccctcctagaagtgagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tttctcataggtttctgatggtcaaggaagaagttccccctttccctcctagaagtgagg 246
Query: 365 aaatgtttattcaaatgatatcacctatactggttttctttagagatttttaggccattg 424
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 245 aaatgtttattcaaatgatatcacctatactgg------------atttttaggccattg 198
Query: 425 attaaattaagagtattaacatttcacagtgttaaaggcaggggctgcataccttgga 482
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 attaaattaagagtgttaacatttcacagtgttaaaggcaggggctgcataccttgga 140
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 884
Length adjustment: 10
Effective length of query: 472
Effective length of database: 874
Effective search space: 412528
Effective search space used: 412528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_o19.g1 MSMg01no367_o19.g1 CHROMAT_FILE:
MSMg01no367_o19.g1 PHD_FILE: MSMg01no367_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:13 2005
(525 letters)
>mm_chr9_52233465_52234389
Length = 925
Score = 901 bits (466), Expect = 0.0
Identities = 511/526 (97%), Gaps = 2/526 (0%)
Strand = Plus / Plus
Query: 1 agtacatgtcaaggcagctcctgctgagcttccgatatggcactgggctcatgggggaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtacatgtcaaggcagctcctgctgagcttccgatatggcactgggctcatgggggaca 260
Query: 61 caaagatgaacgccatggcctccagcagagtgaatctgatgggccagagacacagccaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagatgaacgccatggcctccagcagagtgaatctgatgggccagagacacagccaaa 320
Query: 121 aatgaaacagagtggagtaatttctgcaacagaggcacagtgtgggacctctggcaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaaacagagtggagtaatttctgcaacagaggcacagtgtgggacctctggcaagca 380
Query: 181 gaggctgatagataattttttttt-taggagactcagagggctaagcaaagtggtgtgca 239
||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggctgatggata-tttttttttctaggagactcagagggctaagcaaagtggtgtgca 439
Query: 240 catgatactggagactggagaacctggacatgacgttgcttacctgggcacagtggctgg 299
||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||
Sbjct: 440 catgatactggagactggagaacctgggcatgacattgctcacctgggcacagtggctgg 499
Query: 300 gaactcagactctgtctttaaccaattgcgttaatgtcctcttcaatccactcacggctt 359
||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |||||
Sbjct: 500 gaactcagactctgtctttaaccaattgcattaatgttctcttcagtccactcatggctt 559
Query: 360 taggaccttgcttctggtatgactgaacctccatttcaatatttatagaactgaaataat 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 560 taggaccttgcttctggtatgactgaatctccatttcaatatttatagaactgaaataat 619
Query: 420 aagagtgcctacctgatgctgggagagttgcccacaaagttagtataaagtaaggactca 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 620 aagagtgcctacctgatgctgggagagttgcccacaaagttaatataaagtaaggactca 679
Query: 480 ataggtggtagccattgattatttttggtcaggccatttgtgggag 525
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atagacagtagccattgattatttttggtcaggccatttgtgggag 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|