BAC Information

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BAC

Clone NameMSMg01-368D17
Chromosome9 (Build37)
Map Location 54,036,568 - 54,036,999
singlet/doubletsinglet
Overlap geneCyp19a1
Upstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3
Downstream geneLOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368D17.T7 (MSMg01no368_d17.b1)MSMg01-368D17.TJ (MSMg01no368_d17.g1)
ACCAG475508AG475509
length723750
length of high quality
(start - end)		479 (46 - 524)541 (69 - 609)
definitionCHROMAT_FILE: MSMg01no368_d17.b1 PHD_FILE: MSMg01no368_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:37 2005CHROMAT_FILE: MSMg01no368_d17.g1 PHD_FILE: MSMg01no368_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTTGTACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAGC
GGAGGCCAGCACCATATTATAATGGTGATTGCTCGCGGCACGCAAGGCTC
TACTCAGCGATTGCTGGCAGCAAGGCTCTCCACATCTCCCCCTTTTTATT
TTATTAAAATTTGAGGCTTGTCTAGGCCTGTGTAATTATGCCCATCCGCT
GTGGCTCCTGTCTTAGGTCGTTCCTCCAATGTCACAGCCTTTCCTGTCAT
AGGGTAACCCTATCGCCACCGGGCCCCGTGTCTTAGGTTGATCTGTGCAT
GAGGAAAGTTGCCCGTCCCTGGATACCGCAGTGCTATGTGACAGTAACTA
CTAAATGACCTAGGGCGAACTCTATAAAAGAGGCCAGCCACCAATGTCAA
CTAATTTTTGAGCATAGATAGCCAGATTTCAGGGGAGGCCCCTTGCTCGA
TGGCAGCAAGTGCTTGAGTTATCACAACCTTGTCATTTGTTTGTTGGGTT
CTGAGCTTGCAAAACAACCCGAGCATGAACCACCAGTCCCCAGCAGGTGG
GCAACACCCAAATAAACCCTACCCCCACCCCTTTCCTTTAAAAATAAAAA
AAAGGCCAAAGAAAACCCCGGAAGGAAAAGGGCCCCTCTGTCAAAGGAAA
AGGGCCCCTCCTCGGGGCGAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTGATCTACTGCCTTTGCCTCCTAAGTGCTG
GAATTTAAAGCTTTATACCACCACTGCTGCTGCCTGGCTAAATACACAGA
CTCTTAATCCATATATTGTCTAGCAAGCTTCATTTCTCAATATATACAAA
TCTCCATTGTCATATCTTTTTAAATAAATTTTTCATTTTGGCCAGGTATG
GTGACACACACCTTTAATCTCAACATTTGGGAGGCAGAGGCAGGCAGATC
TCTGTGAGTTCGAGGCCACCCTGGTCTACATAGCAAGTTCCAGGCCAACC
AGGTGCTACATAGTAAGACCCATCTCAAAATGTTTTTATTTTGATAATTT
TTATGTTTTATGGTAGGGAAATACTATACTAGTAGGGGAATAGTGCCTCC
CAAATATAAGCCATTTATAGTATTGCCATTGTGTTTCATGGAGTTTGACT
AATAAGTAAATATTTGTAGACAAGTCTTTTTTTAGTCAAGTCAATACTTG
GCCTCATATAAATTAAATGTTATATAATCTTCTTCCACTTTTGATCTAAA
TGTAAAGACAGNCCTAAATGCTCTAAGAAAGAACAAAAACTGTTGTTATT
TCATTTTAAAATTTGTGTGGTTTGTGGGGATAATGAGNGNGNGGGGNAAG
AAAAACACTCAAAAATTCCCTCGTTATATTAATGCCCACCCCGCCCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_d17.g1 MSMg01no368_d17.g1 CHROMAT_FILE:
MSMg01no368_d17.g1 PHD_FILE: MSMg01no368_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:37 2005
         (541 letters)



>mm_chr9_54036568_54037509
          Length = 942

 Score =  820 bits (424), Expect = 0.0
 Identities = 430/432 (99%), Gaps = 1/432 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgatctactgcctttgcctcctaagtgctggaatttaaagctttataccaccactgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agtgatctactgcctttgcctcctaagtgctggaatttaaagctttataccaccactgct 373

                                                                       
Query: 61  gctgcctggctaaatacacagactcttaatccatatattgtctagcaagcttcatttctc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 372 gctgcctggctaaatacacagactcttaatccacatattgtctagcaagcttcatttctc 313

                                                                       
Query: 121 aatatatacaaatctccattgtcatatctttttaaataaat-ttttcattttggccaggt 179
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 312 aatatatacaaatctccattgtcatatctttttaaataaatgttttcattttggccaggt 253

                                                                       
Query: 180 atggtgacacacacctttaatctcaacatttgggaggcagaggcaggcagatctctgtga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atggtgacacacacctttaatctcaacatttgggaggcagaggcaggcagatctctgtga 193

                                                                       
Query: 240 gttcgaggccaccctggtctacatagcaagttccaggccaaccaggtgctacatagtaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gttcgaggccaccctggtctacatagcaagttccaggccaaccaggtgctacatagtaag 133

                                                                       
Query: 300 acccatctcaaaatgtttttattttgataatttttatgttttatggtagggaaatactat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 acccatctcaaaatgtttttattttgataatttttatgttttatggtagggaaatactat 73

                                                                       
Query: 360 actagtaggggaatagtgcctcccaaatataagccatttatagtattgccattgtgtttc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  actagtaggggaatagtgcctcccaaatataagccatttatagtattgccattgtgtttc 13

                       
Query: 420 atggagtttgac 431
           ||||||||||||
Sbjct: 12  atggagtttgac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space:   494892
Effective search space used:   494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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