Query= MSMg01no368_f24.b1 MSMg01no368_f24.b1 CHROMAT_FILE:
MSMg01no368_f24.b1 PHD_FILE: MSMg01no368_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:48 2005
(575 letters)
>mm_chr9_45001654_45002629
Length = 976
Score = 1040 bits (538), Expect = 0.0
Identities = 565/574 (98%), Gaps = 3/574 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcaacctttcc-ttctactccagccagcaaaa-ctgtgttccagatgagccct 61
||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 776 ggaattctcaacc-ttccattctactccagccagcaaaagctgtgttccagatgagccct 718
Query: 62 aagctggacatgggctgaatcagacccacaggtcagggctctgtacagtgtgagtcaaca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aagctggacatgggctgaatcagacccacaggtcagggctctgtacagtgtgagtcaaca 658
Query: 122 gagtgcatggcctgcctggcccagccagcagctctgacagaagtgtgaagactggagcct 181
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gagcgcatggcctgcctggcccagccagcagctctgacagaagtgtgaagactggagcct 598
Query: 182 tcacttgggctatacaaggactggaccatagtaactatgaccagctcaagagattaaact 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tcacttgggctatacaaggactggaccatagtaactatgaccagctcaagagattaaact 538
Query: 242 caagctgaggataatcaaagatatacctagcagtgaagagggaatcacaattggtctttg 301
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 caagttgaggataatcaaagatatacctagcagtgaagagggaatcacaattggtctttg 478
Query: 302 gttgctttgcaaagttccctcttctactgactctaggatagtatctttcctctgtctggc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gttgctttgcaaagttccctcttctactgactctaggatagtatctttcctctgtctggc 418
Query: 362 ttcagggagagtggcccagggtagtctttagagagcctttcagctctacatccttgacca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttcagggagagtggcccagggtagtctttagagagcctttcagctctacatccttgacca 358
Query: 422 ccgctggatctgccactggtgggatctgatggtatctgagtccctcatggtacccacatg 481
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 357 cggctggatctgccactggtgggatctgatgggatctgagtccctcatggtacccacatg 298
Query: 482 actccacctcgtctttttcttcctcagttcaggacttgctctgggctgagagggggatgg 541
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 297 actccacctcatctttttcttcctcagttcaggacttactctgggctgagagggggatgg 238
Query: 542 aactgccctccagttcctctttctactcttctca 575
||||||||||||||||||||||||||||||||||
Sbjct: 237 aactgccctccagttcctctttctactcttctca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space: 545790
Effective search space used: 545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_f24.g1 MSMg01no368_f24.g1 CHROMAT_FILE:
MSMg01no368_f24.g1 PHD_FILE: MSMg01no368_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:48 2005
(477 letters)
>mm_chr9_44829019_44829893
Length = 875
Score = 687 bits (355), Expect = 0.0
Identities = 470/569 (82%), Gaps = 95/569 (16%)
Strand = Plus / Plus
Query: 1 cttttaaaacaataaacacataaaatcaggcataagcttattgtgtttacccttttgtct 60
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 cttttaaaacgacaaacacataaaatcaggcataagcttattgtgtttacccttttgtct 169
Query: 61 gattacagaagcagagggaatttataagttaactgtaaaggaaacatccaagccagacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gattacagaagcagagggaatttataagttaactgtaaaggaaacatccaagccagacca 229
Query: 121 atttgacaatgagagagaaagggagagtgcgctggcccgggcagctccaa---------- 170
||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 230 atttgacaacgagagagaaagggagagtgcgctggcc-gggcagctccaaaggatagcca 288
Query: 170 ------------------------------------------------------------ 170
Sbjct: 289 gttttcagaacaacggatagccagttttcagaacaacggatagccaggtttcagaacaac 348
Query: 171 ----------------------cggatagccagttttcagaacaacggatagccaggttt 208
||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggatagccaggtttcagaacaacggatagccagttttcagaacaacggatagccaggttt 408
Query: 209 cagaacaacggatagccagttttcagaacctggattctgagttttactttattatttttt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cagaacaacggatagccagttttcagaacctggattctgagttttactttattatttttt 468
Query: 269 ttttttgtggaaagtttatatatgttttaggggataattccttgacaatgtaatcctgca 328
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tttgt-gtggaaagtttatatatgttttaggggataattccttgacaatgtaatcctgca 527
Query: 329 aaaatattacttaaaggaaaacaagacatagacatgccctataagttaaaaaaataaaca 388
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 528 aaaatattacttaaaggaaaacaagacatagacatgccctataagttaaaaaaa-aaaca 586
Query: 389 tataaagcttgaatttcacagtataattaatgtttcctgtgtgatttataaatacatatt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tataaagcttgaatttcacagtataattaatgtttcctgtgtgatttataaatacatatt 646
Query: 449 taggaaaattgattggagaaaatccagca 477
|||||||||||||||||||||||||||||
Sbjct: 647 taggaaaattgattggagaaaatccagca 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 875
Length adjustment: 10
Effective length of query: 467
Effective length of database: 865
Effective search space: 403955
Effective search space used: 403955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
