BAC Information

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BAC

Clone NameMSMg01-368H11
Chromosome9 (Build37)
Map Location 39,293,843 - 39,294,271
singlet/doubletsinglet
Overlap geneOlfr44
Upstream geneOlfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1
Downstream geneOlfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368H11.T7 (MSMg01no368_h11.b1)MSMg01-368H11.TJ (MSMg01no368_h11.g1)
ACCAG475685AG475686
length732732
length of high quality
(start - end)		627 (45 - 671)538 (69 - 606)
definitionCHROMAT_FILE: MSMg01no368_h11.b1 PHD_FILE: MSMg01no368_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:55 2005CHROMAT_FILE: MSMg01no368_h11.g1 PHD_FILE: MSMg01no368_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGCAGTTGAATCCTTCTCACAGTCTGCTTTACGGGAACCTTTATT
ACCGTGACCCGCAGTTCTGGTTCTGGAATGAGAGATCTTCCTTGCGCCAG
TCCCGAGTTTTTTCTCGTATTTTTTTTCGTCCCGGATTTTTTCTCGTCCC
GGATTTTCTCTTCCCGGGTTTCGGCACCAATTGTTAATAACGCGTTCTCA
CGACCGGCCAGGAAAGACGCAACAAACCAGAATCTTCTGCGGCAAAGCTT
TATTGCTTACATCTTCAGGAGCCAGAGTGCAAGAGAGCAAGCAAGGAAGG
AAGGAGGGGAGTGCCAGAACCCCGTCCCTTTTAAGGAGAATTATCCTCCA
CCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTGTC
ATCACGGGAAAGGCAGAACACATGGTGGGAAAACTGCCCCTGCATGTGTG
CAGACTATGTTTACCACTTAGAACACAGCTGTCAGTGCCATCTTATAATG
GCAAATGTGAGGGCGGCTCCTCACAGTGCAGATCTAAAGGATGATGGGGC
TATGGCAGAGGGGATAGATCCACCTTCTGCTCTGTAGGGATTCCAGCTGG
CTTGGGTATTGGGGCAGGGGTCTCACCTGTGCCTGTGGGTACTGCTAATC
CCTTGGAAACAGGCAGGTTTGGGATGTGGGAG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGATTAGATCTTTCTAAGAAGAAAAATTTT
CACATTTTTTTCTAAGAAGAGAAATCATATTATTTGGCTTTTACATAATT
TCTGGTTTCTCTCATTTTATGATTAGAATCATTGCATGTTTTGACTTTTA
AAAAATTTGTGTGTGTGATTTTTAAGAAATTTTGAAGGTGTAATCTTCCA
GGGGTGTCAATAACTTACTTCATGTTGTCTTCAAGAATTTCTGTCTTGCT
GGGCAGTAGTGGTACATACATGCCTTTAATCCCAGCACTTAAGAGGCAGA
GACAGGTGGATTTCTAAGTCCAAGGCCAGCCTGGTCTACAGAGTGAGTTC
CAGGACAGCCAGGGCTTCACAGAGAAACCCTGTCAAAAAAAAAAAAAGAA
TTTCTGTTTTACTCTGTCTACTTAAATCTGTGAGCTTTCTTGAGCTATTA
AATGACTAAACCGTAATCCAGTTATAAATTTAATTTGTGTACACAGTGAT
TAATTTGTTTACAGTTCAGTAGGATAGAAGATAATTATTTATTTCCTTCA
ACTTAGGTGNTTTGGNATTGTCTTCTTCTTAGGTCCCAAGAATAAGTGGG
GAAAGTAATAACTGATCTGAGTATGCTTCTCTAATTGTATGTGGAGAACT
ATCCAGTATTCATTTGACAGAATGTCATATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_h11.g1 MSMg01no368_h11.g1 CHROMAT_FILE:
MSMg01no368_h11.g1 PHD_FILE: MSMg01no368_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:55 2005
         (538 letters)



>mm_chr9_39293843_39294780
          Length = 938

 Score =  762 bits (394), Expect = 0.0
 Identities = 422/434 (97%), Gaps = 5/434 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgattagatctttctaagaagaaaaattttcacatttttttctaagaagagaaatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 actgattagatctttctaagaagaaaaattttcacatttttttctaagaagagaaatcat 370

                                                                       
Query: 61  attatttggcttttacataatttctggtttctctcattttatgattagaatcattgcatg 120
           |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 369 attatttggcttttacataacttctggcttctctcattttatgattagaatcattgcatg 310

                                                                       
Query: 121 ttttgacttttaaaaaatttgtgtgtgtgatttttaagaaattttgaaggtgtaatcttc 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttttgacttttaaaaaaattgtgtgtgtgatttttaagaaattttgaaggtgtaatcttc 250

                                                                       
Query: 181 caggggtgtcaataacttacttcatgttgtcttcaagaatttctgtcttgctgggcagta 240
           ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 249 cagggctgtcaataacttacttcacgttgtcttcaagaatttctgtcttgctgggcagta 190

                                                                       
Query: 241 gtggtacatacatgcctttaatcccagcacttaagaggcagagacaggtggatttctaag 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 189 gtggtacatacatgcctttaatctcagcacttaagaggcagagacaggtggatttctgag 130

                                                                       
Query: 301 tccaaggccagcctggtctacagagtgagttccaggacagccagggcttcacagagaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tccaaggccagcctggtctacagagtgagttccaggacagccagggcttcacagagaaac 70

                                                                       
Query: 361 cctgtcaaaaaaaaaaaaagaatttctgttttactctgtctacttaaatctgtgagcttt 420
           ||||||     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  cctgtc-----aaaaaaaagaatttctgttttactctgtctacttaaatctgtgagcttt 15

                         
Query: 421 cttgagctattaaa 434
           ||||||||||||||
Sbjct: 14  cttgagctattaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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