BAC Information

Click to search

BAC

Clone NameMSMg01-368H23
Chromosome9 (Build37)18 (Build37)
Map Location 123,412,720 - 123,413,22049,846,312 - 49,846,720
singlet/doubletsingletsinglet
Overlap geneLimd1
Upstream geneLOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2
Downstream geneSacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368H23.T7 (MSMg01no368_h23.b1)MSMg01-368H23.TJ (MSMg01no368_h23.g1)
ACCAG475708AG475709
length746748
length of high quality
(start - end)		507 (48 - 554)409 (72 - 480)
definitionCHROMAT_FILE: MSMg01no368_h23.b1 PHD_FILE: MSMg01no368_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:57 2005CHROMAT_FILE: MSMg01no368_h23.g1 PHD_FILE: MSMg01no368_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:57 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,412,720 - 123,413,220)(49,846,312 - 49,846,720)
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCAGCCCTTGAGTGTTTGGTTGCCATGGACACATGTGCTGTG
GTCTTACTTTTCCTTGCTCATGCCCTACCCACCTGTGGTGGCTATGTCCC
CAACAGGATGCTCTTAGAAAGCTGTTGGTTCTCCCTAATGAGAAAGCAGG
AGCAGCCTAGGCAACGCTGGCTCGCACTGTCGAGAAACTTGGCTGAGCAT
TCTCTTCTGGTGGTGCTGGGGTTGGAATGAGAAGAAAGGAGTGTGCTGAC
TTGTGACAATCATGTGGGGTTCCCTTTGGCACTTTCTGGAACAGGCTAAA
AGGGAGAAAGTAGGTAAGGCCTTATATAATCACCCCAGACAGTTTGGATC
CACCCCCATTACTGAGGAAAATGTCCCTGGCAAAGGCTGCTTGAAGAAGT
AGATTAGGAATCATTTTGTGTGACAATATAGATGTCCTAAAATTGTGGTC
TCAGTGGCCATCCATTACTTGNAATATACTTTGAACCATTAAAGTTACTT
TAAATTCATGTGTTGATAGCCACACATGGCAGTAGCTACCTGCTCCTCCA
CCGTGGTCCATACTCTCTGAGAGAGCAATCTTATGAACAGAAACGNAAAA
ATGGTGTATTGTGAAAAAACTGTGACTTTGCCCAGGAAGACCCGAATTTG
GATCTTACTCCAAAATTTCAACCCCGCCCTTTAGTTGAATTCTTTA

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGAAGCTGGGAATTCACTTGACACAGC
TTGAAGGAGAAAGGCACTTATGAAGGCAGTAGTGGAGATGGGGAGGGCTG
GCCAGCGGGATGTGAAAAGCTCACATTAAGACTTAACTAGGGTAGTAAAA
GGGTATGAAGAACAGTCATCTGGCCACAGTGCCTGGGAGGCGACATCACC
TGAGTCTACCTATGAAAGCATGATAGCCCAGAGAGCCACCTCTCTGCCGT
GAGGTTTTAGTTAGCTTATCTATTACCTGGTTTCCTCATGACTTTAAAAA
ATAATACACCATTAGTTTTGATTGCTATCACCCCACCCTCCACTTCTCCC
CCATCCTCTCTGCCTTCTAGAACACAAATTGGATATTGTTTTCATAATCC
TATCTTTATGTTTGAGTTGGACATTGAAAACCATTCATTTACCATTATTG
AGGAAGATAAGCTGACACGTGTAAATCTTTTCTGCTTCATTCCAATACTG
GGTTCCCTTCTTCTCACTTGTGCGTTTTTAGCTTTCTGGGTTACTGGACT
TTCTTTTAAAAGAGGCTCAATTCTGCTAGACTACTTAGCCACCGGGCCCC
CGGATTTTCTTACTTCTTCCTCCCTCCCAAGGCGAGGATACACCTTGTAG
CAACAAACCCCCCGGCTGGTGTTTCCCATTAATCAAACTTTCAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_h23.b1 MSMg01no368_h23.b1 CHROMAT_FILE:
MSMg01no368_h23.b1 PHD_FILE: MSMg01no368_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:57 2005
         (507 letters)



>mm_chr9_123412516_123413422
          Length = 907

 Score =  924 bits (478), Expect = 0.0
 Identities = 495/501 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcagcccttgagtgtttggttgccatggacacatgtgctgtggtcttactttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcagcccttgagtgtttggttgccatggacacatgtgctgtggtcttactttt 264

                                                                       
Query: 65  ccttgctcatgccctacccacctgtggtggctatgtccccaacaggatgctcttagaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccttgctcatgccctacccacctgtggtggctatgtccccaacaggatgctcttagaaag 324

                                                                       
Query: 125 ctgttggttctccctaatgagaaagcaggagcagcctaggcaacgctggctcgcactgtc 184
           ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 325 ctgttggttctccctaatgagaaagcaggagcagcctaggcaatgctggctcacactgtc 384

                                                                       
Query: 185 gagaaacttggctgagcattctcttctggtggtgctggggttggaatgagaagaaaggag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagaaacttggctgagcattctcttctggtggtgctggggttggaatgagaagaaaggag 444

                                                                       
Query: 245 tgtgctgacttgtgacaatcatgtggggttccctttggcactttctggaacaggctaaaa 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgctgacttgtgacaatcgtgtggggttccctttggcactttctggaacaggctaaaa 504

                                                                       
Query: 305 gggagaaagtaggtaaggccttatataatcaccccagacagtttggatccacccccatta 364
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 505 gggagaaagtaggtaaggccttatataatcaccccagacagtttgggtccacccccagta 564

                                                                       
Query: 365 ctgaggaaaatgtccctggcaaaggctgcttgaagaagtagattaggaatcattttgtgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgaggaaaatgtccctggcaaaggctgcttgaagaagtagattaggaatcattttgtgt 624

                                                                       
Query: 425 gacaatatagatgtcctaaaattgtggtctcagtggccatccattacttgnaatatactt 484
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 gacaatatagatgtcctaaaattgtggtctcagtggccatccattacttggaatatactt 684

                                
Query: 485 tgaaccattaaagttacttta 505
           |||||||||||||||||||||
Sbjct: 685 tgaaccattaaagttacttta 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_h23.g1 MSMg01no368_h23.g1 CHROMAT_FILE:
MSMg01no368_h23.g1 PHD_FILE: MSMg01no368_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:57 2005
         (409 letters)



>mm_chr18_49846112_49846920
          Length = 809

 Score =  768 bits (397), Expect = 0.0
 Identities = 406/409 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaagctgggaattcacttgacacagcttgaaggagaaaggcacttatgaaggcagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaagctgggaattcacttgacacagcttgaaggagaaaggcacttatgaaggcagta 260

                                                                       
Query: 61  gtggagatggggagggctggccagcgggatgtgaaaagctcacattaagacttaactagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggagatggggagggctggccagcgggatgtgaaaagctcacattaagacttaactagg 320

                                                                       
Query: 121 gtagtaaaagggtatgaagaacagtcatctggccacagtgcctgggaggcgacatcacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagtaaaagggtatgaagaacagtcatctggccacagtgcctgggaggcgacatcacct 380

                                                                       
Query: 181 gagtctacctatgaaagcatgatagcccagagagccacctctctgccgtgaggttttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtctacctatgaaagcatgatagcccagagagccacctctctgccgtgaggttttagt 440

                                                                       
Query: 241 tagcttatctattacctggtttcctcatgactttaaaaaataatacaccattagttttga 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 tagcttatctattacctggtttcctcaagactttaaaaaataatacaccattagttttga 500

                                                                       
Query: 301 ttgctatcaccccaccctccacttctcccccatcctctctgccttctagaacacaaattg 360
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 501 ttgctatcaccccaccctccacttctcctccatcctctctgccttctagaacaccaattg 560

                                                            
Query: 361 gatattgttttcataatcctatctttatgtttgagttggacattgaaaa 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatattgttttcataatcctatctttatgtttgagttggacattgaaaa 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |