BAC Information

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BAC

Clone NameMSMg01-369F18
Chromosome9 (Build37)
Map Location 37,485,012 - 37,485,483
singlet/doubletsinglet
Overlap geneLOC666881
Upstream geneAcrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3
Downstream geneEG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369F18.T7 (MSMg01no369_f18.b1)MSMg01-369F18.TJ (MSMg01no369_f18.g1)
ACCAG476366AG476367
length752754
length of high quality
(start - end)		479 (41 - 519)540 (77 - 616)
definitionCHROMAT_FILE: MSMg01no369_f18.b1 PHD_FILE: MSMg01no369_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:04 2005CHROMAT_FILE: MSMg01no369_f18.g1 PHD_FILE: MSMg01no369_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGATTTC
TTCTTGGAATGCAGTATGTCCTCATAAGACAAGGGTGCTAAGAAAAGAAG
ATGAGATCTACAATACTCCTCCTGTGTTCAGAGGAGCTCAGGAAAGTTCA
GATGAGGGCAGAATTAAAATGTGTAACTAGATATAGAACATGACATTCTC
AAACCCAAAGAAAACTGACAATTAGGGATCTGGGTCCCCTCCTCTCTGTG
TCTTTTGTAACGTGGTCTCTAGAAGTCTGTTTGTTCTTTACTTCCTTACC
ACATCTCCCTTTTCCTCCTGAAAAATGTCAACTACTCTCTATGCTTCACT
ATGTACTAAGCTTTGGTTCTCAATGCACTGTATTGGGTGACAATTTTTTT
TTTCAACATCTCAAGGCTTACTGTTGATGGTAATTATATGTTGATGCCAA
GAGGATTGTCAAGAAATCTCAAGCCACTTAAAACAAATATGTTGAGGTTT
TATTTTAAAAGAAATCATTTAGAAGGCATGAAACCTCAGAAGATAACATC
AGAAGATATTTTTATGACCTTGGATCTGGCAGTGAACCCCCCCCCCTTTT
TATTTGGCTATTCACCATTTAACTCCTAAAAATAACCCATCTGAATATCT
TATAACCCTTAAACTTTTCCCTCAAGGAAAAGATTTTATATTTTTTAAAC
TAGGGGTTTGTAAAATAATCTTATATCCCCCTTATCTTTTTTAAGAAATT
TT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAGTAAATTGCTTCACAAACTAT
GAAGCCATAAAGCATTTCCAACTATGGTTAAAATATCATAAATTATAAAA
TAATAAATTTAATCAAGAGAAATTTTTAAGACAATAAAAGACAAGTCAAA
AGCCAAATAACAAAATGAAAGGAAATAAATGTATCTTATCCCTGAGGTAA
AAAGTTTATTTCCCTAATATGCAAATGAAAGCAAGAGGATCAAAACCTCA
GAAGAAAATGAGCAAAGGATACAAAAAACACTGCATATAAGAATTTGGGG
GCTGCTGAATATTAAAAAGCATTCTCATAATAAGAGAAATGCAAAACAAA
ACACAAAAAACTTGTTCCTCAGTTATCATTTTGAAATGTGAAATATTTTA
AGAGATACTACATTAGAGAAATTAAAGCAATCATTCCCATTTATTTCTAA
GGAGAATACAAATTCCATATATTTAAGGCAGTTCCCGTCAAAAAGAGCAG
TTTANAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAATTTATGAGCTAA
TTAAAATTAATTAAAGTGTTAAGGATCTACTGTAGCCAAAATATTTCATT
GAACTTAATAAAAGTGATTTTACCGATTGACTGGGCAAGATATGCCCACA
GATACAGTAGTAGTATTAATCCTAGGAGTAACCCGGCCCTTTTCTGAGTG
GAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_f18.b1 MSMg01no369_f18.b1 CHROMAT_FILE:
MSMg01no369_f18.b1 PHD_FILE: MSMg01no369_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:04 2005
         (479 letters)



>mm_chr9_37484805_37485683
          Length = 879

 Score =  913 bits (472), Expect = 0.0
 Identities = 472/472 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcttcttggaatgcagtatgtcctcataagacaagggtgctaagaaaagaagatgagat 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcttcttggaatgcagtatgtcctcataagacaagggtgctaagaaaagaagatgagat 267

                                                                       
Query: 68  ctacaatactcctcctgtgttcagaggagctcaggaaagttcagatgagggcagaattaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctacaatactcctcctgtgttcagaggagctcaggaaagttcagatgagggcagaattaa 327

                                                                       
Query: 128 aatgtgtaactagatatagaacatgacattctcaaacccaaagaaaactgacaattaggg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatgtgtaactagatatagaacatgacattctcaaacccaaagaaaactgacaattaggg 387

                                                                       
Query: 188 atctgggtcccctcctctctgtgtcttttgtaacgtggtctctagaagtctgtttgttct 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atctgggtcccctcctctctgtgtcttttgtaacgtggtctctagaagtctgtttgttct 447

                                                                       
Query: 248 ttacttccttaccacatctcccttttcctcctgaaaaatgtcaactactctctatgcttc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttacttccttaccacatctcccttttcctcctgaaaaatgtcaactactctctatgcttc 507

                                                                       
Query: 308 actatgtactaagctttggttctcaatgcactgtattgggtgacaattttttttttcaac 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 actatgtactaagctttggttctcaatgcactgtattgggtgacaattttttttttcaac 567

                                                                       
Query: 368 atctcaaggcttactgttgatggtaattatatgttgatgccaagaggattgtcaagaaat 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atctcaaggcttactgttgatggtaattatatgttgatgccaagaggattgtcaagaaat 627

                                                               
Query: 428 ctcaagccacttaaaacaaatatgttgaggttttattttaaaagaaatcatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctcaagccacttaaaacaaatatgttgaggttttattttaaaagaaatcatt 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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