Query= MSMg01no369_l09.b1 MSMg01no369_l09.b1 CHROMAT_FILE:
MSMg01no369_l09.b1 PHD_FILE: MSMg01no369_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:31 2005
(185 letters)
>mm_chr9_107342923_107343507
Length = 585
Score = 329 bits (170), Expect = 7e-95
Identities = 179/182 (98%)
Strand = Plus / Minus
Query: 1 attctctacaattaaatgaagcagaattgaattagccactgggttgctatactggagcca 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 attctctacaaggaaatgaagcagaattgaattagccactgggttgctatactggagcca 284
Query: 61 cttcattgtggcttcacaatttaaaggtgtagtgaaggacagatataggtgtaattatgg 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctccattgtggcttcacaatttaaaggtgtagtgaaggacagatataggtgtaattatgg 224
Query: 121 atattgtgctgacttgggctgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 atattgtgctgacttgggctgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 164
Query: 181 gt 182
||
Sbjct: 163 gt 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space: 102129
Effective search space used: 102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no369_l09.g1 MSMg01no369_l09.g1 CHROMAT_FILE:
MSMg01no369_l09.g1 PHD_FILE: MSMg01no369_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:31 2005
(467 letters)
>mm_chr9_107236192_107237057
Length = 866
Score = 880 bits (455), Expect = 0.0
Identities = 464/467 (99%), Gaps = 1/467 (0%)
Strand = Plus / Plus
Query: 1 aacatggtatgacagaagagaaatataggacagagacagggaatgggcagttggtggctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatggtatgacagaagagaaatataggacagagacagggaatgggcagttggtggctt 260
Query: 61 tccctggggccactgctccaaatgggactgcacagttcctacagaggtggccctgcggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctggggccactgctccaaatgggactgcacagttcctacagaggtggccctgcggtc 320
Query: 121 tcagcaggatacaagggcatgcacaccctgtgttaggatcctatccctgctgggctgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagcaggatacaagggcatgcacaccctgtgttaggatcctatccctgctgggctgact 380
Query: 181 ccctaaaacagttacagcactgagcctctcccaggccacacagtcacacagcaccagatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctaaaacagttacagcactgagcctctcccaggccacacagtcacacagcaccagatg 440
Query: 241 gagatgtatatggctcccacccggacctcgggcttcccactgtatatatcaccacaccgg 300
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagatgga-atggctcccacccggacctcgggcttcccactgtatatatcaccacaccgg 499
Query: 301 aggcctcaccaccctctcacctcctagggaaaaccaaactcatcaggtcgcaagccactt 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 aggcctcaccaccctctcacctcctagggaaaaccaaactcatcaggccgcaagccactt 559
Query: 361 gcaattctgcacttcagactttcacacccatcatcaaaaaccgccctttgatggacagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcaattctgcacttcagactttcacacccatcatcaaaaaccgccctttgatggacagag 619
Query: 421 actccagactctgtgaccccactcccctgagtcccttctctccactc 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actccagactctgtgaccccactcccctgagtcccttctctccactc 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 866
Length adjustment: 10
Effective length of query: 457
Effective length of database: 856
Effective search space: 391192
Effective search space used: 391192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
