BAC Information

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BAC

Clone NameMSMg01-370A20
Chromosome9 (Build37)
Map Location 26,386,187 - 26,558,521
singlet/doubletdoublet
Overlap genenone
Upstream gene2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370A20.T7 (MSMg01no370_a20.b1)MSMg01-370A20.TJ (MSMg01no370_a20.g1)
ACCAG476890AG476891
length769797
length of high quality
(start - end)		483 (39 - 521)261 (68 - 328)
definitionCHROMAT_FILE: MSMg01no370_a20.b1 PHD_FILE: MSMg01no370_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:58 2005CHROMAT_FILE: MSMg01no370_a20.g1 PHD_FILE: MSMg01no370_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,558,043 - 26,558,521)(26,386,187 - 26,386,447)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TTAGGGCATCTTCTCATAGGATGTGCCTCGGGTCAGAGGTGAGCATCAGC
AGGAGGAGGGGCTGTTCTCTGAGGAACTGTCAGGCAGTAGGGAGACATTT
CTCAAAAAAAATGGTAGCTGTGAGAGCCTGAGGCCAAGGCCCTTGCTATA
GAACAACCCGATGGGCTTCACTCCTGGTTCTGGAGAGGATCTGCTAGTAG
ATGCTTCTTTGGGACCTTGTGTTCCCTTGTGACAGGAGTGTAAGTGTGAC
CAGCTCATAGCTCCCTTGGGGATGGTCACATCCTTTCCTCCTCTCCCTCC
TGCCCCTCCTGAGCAGGTGCTGCTGGGTCCATAACTGGTAGGAGCACTTG
GCACTCTGGCTGGCCCTCAACATGTTCATCAAGCTAGAGCCCATCATTAC
ATGGTAGGCAGTCACTCTAGAGGCCATATTGTCTGCCCTACTCAGCCCAC
ATGTGCTCTTGGTCTTTGCCAATGACGAAAGTTATGGGCAACCAAAACAT
TTTGTGGGCCAGTTTTGGAAATAATGTTACTTTTTTTTTTTTTTTTGGGC
AACATCCCATGGCCAGCCATTCTCTATAAAGACTCTTGGTTCCCAAAAAA
CAAGGAGACTGGCTGGCACTCACTTCTCTATGAAAGGAAACCCCATTGAT
CAAGGGTTCGTGCCTCCTGTCTTGTCCCCACAAAATTTAAACCCCCCCCC
TCCAAACCAAAGCCGGATT

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGGGTGCCTCCAAGAGACTCAATAAAATTCTCA
TCAGTTTCATGNTAGGTTTTATTGAGGGGAAGGAAAAGGGAATGGAGTGA
GAAATGCTGAGTCAAAGTGTCCTTTGGGCAGGAGGTTTATTAACATCTTA
ATTCTGCATCACACAGGAGAGTTTCAGGCCCAAGAAACAAATGAGAGTAT
CTACGTTTAAAGGTCTCTGAAGAAATGGGAAGTCCTGCACAGTAAGGAAG
CAGACTTAGCTAATATGTGACCTGTGCCATGAGAGATAGGCGACAAGCAG
GGCATACACCACTTACCGTAATATGCCCTCTGTGAGTACCGTAACTGGTT
ATCATCGCCCCCCATTTTTTCCCATTTTCCCTCTCTTTCCTTTCTTCCCC
TCCTTGCCTTTTCCCTCCCTCGTCTTCTCCTTCCTCTCTTTTTCTCTCTC
CCTCTTCCCTGTCTCCCCTCCACCTTCCTTTCTCCTCTTTTCTCTTTCCC
CTTCTCTTTTCCTTCCCCTTCTCCCTCTCTACTTTTTTTTTTTTCCTTCT
CCCCCCTTCTTCTTTTCTTCTCTTTTCCTCCCCCTTTCTCCTTTTTCCCT
CTCCCTTTTCTCTCCCCTCTCTCCCTTCCCTCTTTCTTTTTCCCCCTTTT
TCTTCTTTTTTCCCTCCCTCTCCCCGCTTCTCCTCCTTTCTCCCTTCCCT
TCTCTCCTTTCCTTTTCTCCCTCCTCCTTATTTTCTCCCTCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_a20.b1 MSMg01no370_a20.b1 CHROMAT_FILE:
MSMg01no370_a20.b1 PHD_FILE: MSMg01no370_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:58 2005
         (483 letters)



>mm_chr9_26557839_26558721
          Length = 883

 Score =  888 bits (459), Expect = 0.0
 Identities = 474/479 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttagggcatcttctcataggatgtgcctcgggtcagaggtgagcatcagcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaattcttttagggcatcttctcataggatgtgcctcgggtcagaggtgagcatcagcag 624

                                                                       
Query: 65  gaggaggggctgttctctgaggaactgtcaggcagtagggagacatttctcaaaaaaaat 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 623 gaggaggggctgttctctgaggaactgtcaggtagtagggagacatttctcaaaaaaaat 564

                                                                       
Query: 125 ggtagctgtgagagcctgaggccaaggcccttgctatagaacaacccgatgggcttcact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 563 ggtagctgtgagagcctgaggccaaggcccttgctatagaacaacccgatgggtttcact 504

                                                                       
Query: 185 cctggttctggagaggatctgctagtagatgcttctttgggaccttgtgttcccttgtga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctggttctggagaggatctgctagtagatgcttctttgggaccttgtgttcccttgtga 444

                                                                       
Query: 245 caggagtgtaagtgtgaccagctcatagctcccttggggatggtcacatcctttcctcct 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caggagagtaagtgtgaccagctcatagctcccttggggatggtcacatcctttcctcct 384

                                                                       
Query: 305 ctccctcctgcccctcctgagcaggtgctgctgggtccataactggtaggagcacttggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctccctcctgcccctcctgagcaggtgctgctgggtccataactggtaggagcacttggc 324

                                                                       
Query: 365 actctggctggccctcaacatgttcatcaagctagagcccatcattacatggtaggcagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 actctggctggccctcaacatgttcatcaagctagagcccatcattacacggtaggcagt 264

                                                                      
Query: 425 cactctagaggccatattgtctgccctactcagcccacatgtgctcttggtctttgcca 483
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cactccagaggccatattgtctgccctactcagcccacatgtgctcttggtctttgcca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_a20.g1 MSMg01no370_a20.g1 CHROMAT_FILE:
MSMg01no370_a20.g1 PHD_FILE: MSMg01no370_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:58 2005
         (261 letters)



>mm_chr9_26385987_26386647
          Length = 661

 Score =  476 bits (246), Expect = e-139
 Identities = 257/261 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtgcctccaagagactcaataaaattctcatcagtttcatgntaggttttattgagg 60
           ||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct: 201 agggtgcctccaagagactcaataaaattttcatcactttcatggtaggttttattgagg 260

                                                                       
Query: 61  ggaaggaaaagggaatggagtgagaaatgctgagtcaaagtgtcctttgggcaggaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaggaaaagggaatggagtgagaaatgctgagtcaaagtgtcctttgggcaggaggtt 320

                                                                       
Query: 121 tattaacatcttaattctgcatcacacaggagagtttcaggcccaagaaacaaatgagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tattaacatcttaattctgcatcacacaggagagtttcaggcccaagaaacaaataagag 380

                                                                       
Query: 181 tatctacgtttaaaggtctctgaagaaatgggaagtcctgcacagtaaggaagcagactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctacgtttaaaggtctctgaagaaatgggaagtcctgcacagtaaggaagcagactt 440

                                
Query: 241 agctaatatgtgacctgtgcc 261
           |||||||||||||||||||||
Sbjct: 441 agctaatatgtgacctgtgcc 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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