Query= MSMg01no370_c08.b1 MSMg01no370_c08.b1 CHROMAT_FILE:
MSMg01no370_c08.b1 PHD_FILE: MSMg01no370_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:05 2005
(453 letters)
>mm_chr9_63028473_63029324
Length = 852
Score = 845 bits (437), Expect = 0.0
Identities = 446/449 (99%), Gaps = 1/449 (0%)
Strand = Plus / Plus
Query: 5 gaattcttctgaatgcatcagtcacaagttctgtgcaagcatttcttttatgtctgtcag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctgaatgcatcagtcacaagttctgtgcaagcatttcttttatgtctgtcag 264
Query: 65 gttggttctgaggaaacaaactaaggtaacaagtttgcccagtgtgggtatcagagtatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttggttctgaggaaacaaactaaggtaacaagtttgcccagtgtgggtatcagagtatg 324
Query: 125 gtactctcccttatgatccaagctgagtttcacatttgtgcataaatagtgataaatgca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtactctcccttatgatccaagctgagtttcacatttgtgcataaatagtgataaatgca 384
Query: 185 cacagagaaccccccccacccccatcctgtgaggcctggcccattggctactccatttac 244
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacacagaaccccccc-acccccatcctgtgaggcctggcccattggctactccatttac 443
Query: 245 aaagtctccccagatgcccagagccaaaggaaaccctttcttctctcagaactcatttta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaagtctccccagatgcccagagccaaaggaaaccctttcttctctcagaactcatttta 503
Query: 305 cccatcaaataaattcctattatttcaggtcggtagacatttgctgactgttggtctcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccatcaaataaattcctattatttcaggtcggtagacatttgctgactgttggtctcag 563
Query: 365 gtgaggctggatactaaagatacaaagagggtgataaataggacttgatctgtcctctag 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgaggctggatgctaaagatacaaagagggtgataaataggacttgatctgtcctctag 623
Query: 425 gaaccatgatctggtctgtgaccaggtac 453
|||||||||||||||||||||||||||||
Sbjct: 624 gaaccatgatctggtctgtgaccaggtac 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 852
Length adjustment: 10
Effective length of query: 443
Effective length of database: 842
Effective search space: 373006
Effective search space used: 373006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_c08.g1 MSMg01no370_c08.g1 CHROMAT_FILE:
MSMg01no370_c08.g1 PHD_FILE: MSMg01no370_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:05 2005
(382 letters)
>mm_chr9_63191064_63191845
Length = 782
Score = 729 bits (377), Expect = 0.0
Identities = 380/381 (99%)
Strand = Plus / Minus
Query: 1 caaatattgagcctattcattttgctttacaaatttcagaggaaaagcacaagaagcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 caaatattgagcctattcattttgctttacaaatttcagaggaaaagcacaagaagcaat 522
Query: 61 ttgagtaatttctataaaatgcttttttatgatttaaaatatatatcattttaaagtatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttgagtaatttctataaaatgcttttttatgatttaaaatatatatcattttaaagtatg 462
Query: 121 ttaaatactaacatggggtcttagttaatactgttagtcttaaagataaatggtggtatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttaaatactaacatggggtcttagttaatactgttagtcttaaagataaatggtggtatg 402
Query: 181 gacgataaccccctactagacttccaaatcttgaatacattcactgtagcaattttgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gacgataaccccctactagacttccaaatcttgaatacattcactgtagcaattttgatg 342
Query: 241 tgtaactagagacactgtgtactcaaggctgatgtgtgcataccagccatttacaagagt 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgcaactagagacactgtgtactcaaggctgatgtgtgcataccagccatttacaagagt 282
Query: 301 accatgaattaaacagcccgtaagtgtctgtcccagtgtccatacattactgagtaatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 accatgaattaaacagcccgtaagtgtctgtcccagtgtccatacattactgagtaatct 222
Query: 361 ctttctattatctctttgcag 381
|||||||||||||||||||||
Sbjct: 221 ctttctattatctctttgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space: 288329
Effective search space used: 288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
