Query= MSMg01no370_d05.b1 MSMg01no370_d05.b1 CHROMAT_FILE:
MSMg01no370_d05.b1 PHD_FILE: MSMg01no370_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:10 2005
(355 letters)
>mm_chr9_96499207_96499961
Length = 755
Score = 646 bits (334), Expect = 0.0
Identities = 346/350 (98%)
Strand = Plus / Plus
Query: 5 gaattctttctataactaagagtacacgtcactgaaagacagcacagtgctgtgactagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctataactaagagtacacgtcactgaaagacagcacagtgctgtgactagg 264
Query: 65 agttaggcagatctctaatgggatcacagcttctatgactaagtcctttaatcctattaa 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 agttaggcagatctctaatgggatcacatcttctatgactaagtcctttaatcctattaa 324
Query: 125 tataatctgcaaaatgaggttaatatacctacctcatagtgctactatgggccttaaatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tataatctgcaaaatgaggttaatatacctacctcatagtgctactatgggccttaaatg 384
Query: 185 agataatgtatattaagtactcacggctatacttggtacatattttataattactaaaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agataatgtatattaagtactcacggctatacttggtacatattttataattactaaaag 444
Query: 245 taatcattagattgagtcctggctaaatgtaatctcattgctttctatactgccatctat 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 taatcattagattgagtcctggctaaatgtaatctcattgctttctatgctgccatctat 504
Query: 305 ttttatttttgcatatctttaaaagatattataaaacttatacagggtaa 354
|||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttctttttgcatgtctttaaaagatattataaaacttatacagggtaa 554
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space: 258116
Effective search space used: 258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_d05.g1 MSMg01no370_d05.g1 CHROMAT_FILE:
MSMg01no370_d05.g1 PHD_FILE: MSMg01no370_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:10 2005
(351 letters)
>mm_chr9_96710518_96711268
Length = 751
Score = 358 bits (185), Expect = e-103
Identities = 236/259 (91%), Gaps = 12/259 (4%)
Strand = Plus / Minus
Query: 2 gtttcaaatatgacagctgctgcgttactccgaaaagtccactcacctccacactgagaa 61
||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct: 580 gtttcaaatatgacagctgctgcgttactcctaaaagtccacccacctctacactgagaa 521
Query: 62 tcacccaag-taacatctccatagtagagtccagtagcagtgcatatctgccactgtccc 120
|||||| || | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 520 tcaccc-agatgacatctccatagtagagtccagtagcagtgcacatctgccactgtccc 462
Query: 121 tggtacatgcctgctctgctggcactgcacatctggacgctgacgtctacaatctctagg 180
||| ||||||||| |||||||||||||||||||| |||| |||||||||
Sbjct: 461 tgg----------ctctgctgggactgcacatctggacgctgatgtctgtgatctctagg 412
Query: 181 ggctctagtgatctcaccatcaccacgttcacgtgtctaaactggtctccccaacatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggctctagtgatctcaccatcaccacgttcacgtgtctaaactggtctccccaacatatt 352
Query: 241 taagacaaccccctggagg 259
|||||||| ||||||||||
Sbjct: 351 taagacaaacccctggagg 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space: 253764
Effective search space used: 253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
