BAC Information

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BAC

Clone NameMSMg01-370D22
Chromosome9 (Build37)
Map Location 58,567,642 - 58,568,000
singlet/doubletsinglet
Overlap gene2410076I21Rik
Upstream geneEdc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn
Downstream geneHcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370D22.T7 (MSMg01no370_d22.b1)MSMg01-370D22.TJ (MSMg01no370_d22.g1)
ACCAG477038AG477039
length797794
length of high quality
(start - end)		427 (37 - 463)363 (70 - 432)
definitionCHROMAT_FILE: MSMg01no370_d22.b1 PHD_FILE: MSMg01no370_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:14 2005CHROMAT_FILE: MSMg01no370_d22.g1 PHD_FILE: MSMg01no370_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATG
TTCACATCTTTTGCAGGCTATAGGTGTGTCCTTCATTCTTGGCTAATGGC
CTTTGCTTCCATCTTCAGCCCAGCCCCACTGTTTGCATTTCACTCTATGT
TCCTGCAACCTTCTTCTAGGAACACCTATGATGACGTTGGGCCCACATTC
AATAATCCAGGCAATGTCTTAAGATTTCTCATCTACCAGGCATTTTCAAC
CTTCTGACATCACACAACATTATCATCTGTGAAGTCTGCATTCAAGGACT
GCATAACTGGGGGCTGGAGAAATGGCTCAGTGGTTAGGAGCACTGACTGC
TCTTCTAGGGGTCCTAAGTTCAATTCCCAGCAACCACATGGTGGGCATCA
CAACCATGTGTAATGGGATCTGATACCCTCTTCTGGTATGTCTGAAGATA
GCTACACCGTATTCTCATACNTAAAATAAATAATAACAATTTTTAAAATA
CTGCAAAAATATCTCATAATGTTCAAGTAAGTATACGATTCCTGTGCTTG
GCACATTAACAACTATCTTGGGGTACANGAAGGATTGTGTCTTTGAATAT
ATAAGCTCTGAATTTCTTTTTGCCCAAGAAAGGGTTTTCATAGAAGTCCC
ACATGGGAAACCTTTTGGGGTTGTTTTTCTACCTAATTAATTTCACAGTT
GGCATTCTTTTAACTGAATCACTCCGTGGAAAACTGTCCTCCCCCAAAAA
TTTTTTGAAACAAACCCCCCATTTCCTCTCGCCAATAATAACCTTCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAATACCTGGTTTCCCTTTCAGTCTGTTAT
CTGTTCATATGCTATTTAGAAATACTATTTAGTTCTAAAATGTTTGAGCA
ATTTTTAGCACCCTGTTGCTGATTTTTTTTAACTTAATTGTGCTCAGAAA
ATATTCTTTGATTTATTTGGACATAAAGCCATTCAATGGGATGCAGTGTG
ATACTTTGGTGACTATACATGATATAATCAGTCACTGTATTTAGCATATC
CAAGGAAATATGTATCAGTTCTTTTCCATGGAATAATTTAAAGCCTCTCT
TATAGATTTACTGAGTTTTTTTCAGTGCAATATTAACTGAGGTCACTTTG
TCCTTGCCCTGTCTTCCTGGGGGTTGATGGACCTTGTACATGCTACGCAA
GTATCCACCACTGATCTGTGTTCCCCCACGACCTTTGTTTCTTTTTGTGG
TTGACTGCTGTCCTGCGTTATTTACTCCCGTTTTCTTGGTTCGCTCCTCT
TAAGTGAACATCTTTTTTCTCTATCAAGTTTACCTCCCCTCTTCCGCCCT
CTTTTCTTTCCCTTCCTTTTTTCTTATTCACCCTCTGTCCTTATTTATTT
CCCCCCCCCACTTATCCCACTTCTTTTTTTTTTTCTCTTTTTCTCCTTTT
CCTTTTTCCTTTTCCTCTTTTTTTCCCCTCCCCTTCCCACTCCCCTACTC
TTTTCTCTTTCTCACTTTCTTTACTTTCTACTTTCTCCCCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_d22.g1 MSMg01no370_d22.g1 CHROMAT_FILE:
MSMg01no370_d22.g1 PHD_FILE: MSMg01no370_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:14 2005
         (363 letters)



>mm_chr9_58567636_58568397
          Length = 762

 Score =  642 bits (332), Expect = 0.0
 Identities = 353/360 (98%), Gaps = 1/360 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatacctggtttccctttcagtctgttatctgttcatatgctatttagaaatactatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaaatacctggtttccctttcagtctgttatctgttcatatgctatttagaaatactatt 306

                                                                       
Query: 61  tagttctaaaatgtttgagcaatttttagcaccctgttgctgattttttttaacttaatt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 305 tagttctaaaatgtttgagcaatttttagcaccctgttgctga-tttttttaacttaatt 247

                                                                       
Query: 121 gtgctcagaaaatattctttgatttatttggacataaagccattcaatgggatgcagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtgctcagaaaatattctttgatttatttggacataaagccattcaatgggatgcagtgt 187

                                                                       
Query: 181 gatactttggtgactatacatgatataatcagtcactgtatttagcatatccaaggaaat 240
           ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 186 gatgctttggttactatacatgatataatcagtcactgtatttagcatatccaagcaaat 127

                                                                       
Query: 241 atgtatcagttcttttccatggaataatttaaagcctctcttatagatttactgagtttt 300
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 126 atgtatcagctcttttccatggaacaatttaaagcctctcttatagatttactgagtttt 67

                                                                       
Query: 301 tttcagtgcaatattaactgaggtcactttgtccttgccctgtcttcctgggggttgatg 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  tttcggtgcaatattaactgaggtcactttgtccttgccctgtcttcctgggggttgatg 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 762
Length adjustment: 9
Effective length of query: 354
Effective length of database: 753
Effective search space:   266562
Effective search space used:   266562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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