BAC Information

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BAC

Clone NameMSMg01-370G05
Chromosome9 (Build37)
Map Location 90,732,015 - 90,732,192
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370G05.T7 (MSMg01no370_g05.b1)MSMg01-370G05.TJ (MSMg01no370_g05.g1)
ACCAG477148AG477149
length753749
length of high quality
(start - end)
186 (61 - 246)349 (73 - 421)
definitionCHROMAT_FILE: MSMg01no370_g05.b1 PHD_FILE: MSMg01no370_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:26 2005CHROMAT_FILE: MSMg01no370_g05.g1 PHD_FILE: MSMg01no370_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCGGCGTCCNCNNTTTATATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCAGAGATCCTTATCGTTCTGCAAGGACAGA
AGTGCGCTACATATCCAAACGGAGCTCTGGGGATTCAGCCCCACTTCTCC
AGATCTCACATTCTTCTGCCTTGTTTAAAGCAAACCTCTGCAGCAGACAG
AACCTCAGACCCCCAGACAGACAACTCTTCTTACCAACTGCAAAAGTAGA
AACTCTCCCAAAACTTATTTTTAAAAGGCCTTGTAAATTTGTCAAATTTC
TAAAGGAATAAGGGAATTTATTGAAAATTTAAGGAATGGAATTACCCTTT
TTTATAAAAAATATGGTAAGCGTCTATCGGCCGGGGTCTCAAAAGTAATA
CAATGGTGGGGTGGGGTTCTCCCACCTAACCGCTCCCTTTTATCCCCTTC
TCTTCCTCTTTTTTTGTTCTCGCTCTTCACACTCCCTTATCATTCCCTTC
TCGTGTCCTCCCCCCCTTTTTTCCTCCTTCTTCTTCCCGTCACTCTCTCT
CTCCATTATCTTGCACCCCTCCCTTATCTTATCCCTTCCTGCCCACCCGC
ATTTCCTATTTCTCACTTCTTTCCCTCATTTCTCTTTTCTCTCTTTCTCT
ACTCAACCCCATTTTTTCCCGTCGTTATTTCTACAACCCATTACCTCCGG
CCCCTTTTTCTTTTCCCCTCTATCTCTCTTCTTCCGCTTTTCCGCTCTCC
TTT
TTACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGACTAGGTGAGAGTGATGGTTACCAT
TTTCTCCCCTCTGGTGGCATGCACAGTAACATGCAGCACAATTAAAGCTG
GATAATGGGGCTAAAGATGCCAGGTGAATCCTTGCATTATTCCTCACATT
CTGACTCAAGGATGTGGTGCCTTCAGCAATAAGGTCTTATTGTTAAGTTC
TCAAGGGCAAGCAAGAGGAATGCAATAGTCTAATCTTTTTATTTAGTAGG
TTTCCATATGACTTTCTCAAAAGGCCTTTAATGTTAATTATCCCTTAGCA
TAATCCCTCCTCTGGTCTGCCCTCTGATTCCCCACCCCCTTCCAGTATTC
CCTTTTCATTATGCATATCATCACATGTTTGCACCCCCCATGACCCTTTG
AAAGTGACCTCATCTCCCCGGTTAAATGGAACATTCTCCTTGAAGATTCA
CAGTAGCCTCTACCTACTATAGTTATCAGTGCTAACTTCCTTTCTTGACC
CCATGTTGTCTCCTTCTTCTCTATTGTTTTTCCAACCCTCCCCTTCTCCT
TCCTTTTTTTCTTCGCTCATTTTTCTTCTCCTCTCCCCTATAATCCCCCT
CTTAACCCCCTCTCCTATTTCTCATTTCCCCCTCGTCTTTTCATTCTTTC
CTCCCCTCCCTTTTTGTTTTCTTCCCTTCCCTCATTCTTTTCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_g05.b1 MSMg01no370_g05.b1 CHROMAT_FILE:
MSMg01no370_g05.b1 PHD_FILE: MSMg01no370_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:26 2005
         (186 letters)



>mm_chr9_90731811_90732392
          Length = 582

 Score =  325 bits (168), Expect = 1e-93
 Identities = 177/182 (97%), Gaps = 4/182 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagagatccttatcgttctgcaaggacagaagtgcgctacatatccaaacggag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagagatccttatcgttctgcaaggacagaagtgcgctacatatccaaacggag 264

                                                                       
Query: 65  ctctggggattcagccccacttctccagatctcacattcttctgccttgtttaaagcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 ctctggggattcagccccacttctccagatctcacattcttctgccttgtttaaagccaa 324

                                                                       
Query: 125 cctctgcagcagacagaacctcagacccccagacagacaactcttcttaccaactgcaaa 184
           |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctctgcagcaga----acctcagacccccagacagacaactcttcttaccaactgcaaa 380

             
Query: 185 ag 186
           ||
Sbjct: 381 ag 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 582
Length adjustment: 8
Effective length of query: 178
Effective length of database: 574
Effective search space:   102172
Effective search space used:   102172
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)