Query= MSMg01no370_i23.b1 MSMg01no370_i23.b1 CHROMAT_FILE:
MSMg01no370_i23.b1 PHD_FILE: MSMg01no370_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:39 2005
(474 letters)
>mm_chr9_73572621_73573494
Length = 874
Score = 603 bits (312), Expect = e-177
Identities = 366/386 (94%), Gaps = 9/386 (2%)
Strand = Plus / Minus
Query: 92 aaaaaaaaagccag-gc-gtggtggcacatgcctttaatcccagcacttgggaggcagaa 149
|||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aaaaaaaaag-cagagcggtggtggcacatgcctttaatcccagcacttgggaggcagag 781
Query: 150 gcaggcaggtgtctgagttcgaggccagcctgatctacagagtgagttccaggatagcca 209
|||||||| | |||||||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct: 780 gcaggcagatttctgagttcgaggccaacctggtctacagagtgagttccaggacagcca 721
Query: 210 gggctacacagagaaaccctgtctc-gaaaaaccaaaagaaaaagaaaattaaaaggagt 268
|||||||||||| |||||||||||| |||||||||||||||| |||| |||||||||
Sbjct: 720 gggctacacagaaaaaccctgtctcagaaaaaccaaaagaaa---aaaa--aaaaggagt 666
Query: 269 tattttgccattgctttgcactagaacctatgaattctgtaacaagagaaaggggtatag 328
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tattttgccattgctttgcattagaacctatgaattctgtaacaagagaaaggggtatag 606
Query: 329 agcatggattgtgtttcttaaaaacacaaattggaaacccaaaaagaattaataagcagc 388
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 605 agcgtggattgtgtttcttaaaaacacaaattggaaactcaaaaagaattaataagcagc 546
Query: 389 aaaccttgaaaaaatacagccctaaagactgccacatcctgttctgtgggcagagataga 448
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaaccttgaaaaaatacagtcctaaagactgccacatcctgttctgtgggcagagataga 486
Query: 449 agaagatcatgatctttgcttagttc 474
||||||||||||||||||||||||||
Sbjct: 485 agaagatcatgatctttgcttagttc 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_i23.g1 MSMg01no370_i23.g1 CHROMAT_FILE:
MSMg01no370_i23.g1 PHD_FILE: MSMg01no370_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:39 2005
(386 letters)
>mm_chr9_73544857_73545642
Length = 786
Score = 731 bits (378), Expect = 0.0
Identities = 384/386 (99%)
Strand = Plus / Plus
Query: 1 agagcaaggagagaatttacacaaaggatatagtgaattatttgtgacggttgaacacac 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcaaggagagaatttgcacaaaggatatagtgaattatttgtgacggttgaacacac 260
Query: 61 ttaggaatttcatacaaagctaagaaatgcaaactaattccatctctctctctgacctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaggaatttcatacaaagctaagaaatgcaaactaattccatctctctctctgacctcc 320
Query: 121 ctcctttcctgtctttctccctcctcattcccttcctgaaggcaaacaccagaaatgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctttcctgtctttctccctcctcattcccttcctgaaggcaaacaccagaaatgaaa 380
Query: 181 gaatcactagcttagaattctctccccttgagcagctgaaggtgctggaaaaaaagcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatcactagcttagaattctctccccttgagcagctgaaggtgctggaaaaaaagcttt 440
Query: 241 ctgcacagcaccacagcaaatgtttctttcacagtttaaaggtagtttcatatcaaagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcacagcaccacagcaaatgtttctttcacagtttaaaggtagtttcatatcaaagat 500
Query: 301 gggcagccatttaaccaaatatcacagctaagttccccagcaaactgtttatacccaaat 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggcagccatttaaccaaatattacagctaagttccccagcaaactgtttatacccaaat 560
Query: 361 aagtaaaatccaaagaataaaacact 386
||||||||||||||||||||||||||
Sbjct: 561 aagtaaaatccaaagaataaaacact 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
