BAC Information

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BAC

Clone NameMSMg01-371E14
Chromosome9 (Build37)
Map Location 40,214,310 - 40,214,857
singlet/doubletsinglet
Overlap geneGramd1b
Upstream geneOlfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b
Downstream geneLOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371E14.T7 (MSMg01no371_e14.b1)MSMg01-371E14.TJ (MSMg01no371_e14.g1)
ACCAG477832AG477833
length1,079769
length of high quality
(start - end)		---552 (42 - 593)
definitionCHROMAT_FILE: MSMg01no371_e14.b1 PHD_FILE: MSMg01no371_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:39 2005CHROMAT_FILE: MSMg01no371_e14.g1 PHD_FILE: MSMg01no371_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTTAAATGATCGGACGCGANGAAANCGGCNGNATACAANCACGGAAGG
GGGNNNNANNNGGGNTTTCTCCAAAAAACAAAGGNANGGGGANAAACACG
AAGACACACCGACAAAAAAGACATATACCTGTATACCCCCAAACCAATCG
AGCGAAGCGATCTCCACTTGAACTGCGTTTTCTAAATTATCTGCGGAGGG
GGGGTGCAGGGTAACGACTAACACTGTAGCCATAGCACTACATGACGCAC
GCAACACACACAAAATCACCAAGAAAAGTCATCATTTAATTACCGCCTCA
TCTTCCCTCTATTCATTAATAAAGTGATGAAAAAATCACTAGCTTAAAGA
GAGGAGTGGCGAGCTGCGTATGTCTATGCGTTTTGCCAAGAGAACGAGCG
CTATTTTTTTTTTGTACTAAAAAAGAACAGACAATATTCTAATTGTAACG
ATACTTTCAGATGTAGTTCAAGAGGCATAAAGAGGGCACACTTCGACTGA
CGAACACAAATCACCGATATAACCGTCCGTGAAGACTACTTCCACCCCCT
ACCACCGCACCTTAATTATGATGGCACTTATGATTCAAGAACACTCCTAC
TACTATATATGATCCATTTCACCCAACGTCCATACCTTACCCATTATATA
TACCATAACACTATTATCTCAATACACCAACCTTAATCAATATGAATGCT
GTGCATCTCCATCTATATTATATAACACAATTTAATCATCTCTCCCCAAA
TCCCCTACTTATAGCGCATGTTCCTTTCACATTCACTTTCGGCGCACAAA
CCATGTCCACACCCGCTCAATTACATACACATTAAACCTCCGGTATCTAC
CATAGAACATATATTCTACTTAATATCCATAAAAAACACTCCATATTCAA
CATAAAAAATTTCAAAACACACATGACAATGAACACAATCACGCGCAGAT
CACTTCCAAAACAAAATCCATAATACCCCCACACNACTATCTCACCCGTC
GCCTTCAACTGTATCGAACTATCATAGCAATATACACACACACAATATCT
TACCAACACCTCACACATCACTTAACTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATATATGCATAGAATGTATTTGGATCATATCTAGCATCCACTCCTCCA
CGAATGTTCCTTCTCCAATCCCTCCCAACTTCATGCCAGTGCCTCTTTGT
TAGTGTTGTTATTTTATACCCCACAGAGTCCAAATTAGTGCTACCCCAGG
AAAAAGGATGGGCGACCCCCACCGGAGCATGGGCAATTTTCCCTCTCCCA
GCAGCTATCAACTGTCAATCACCCTCAGCTCAGTGAGGTCTCATGAGACC
CTTCCGTGCCTTTGCTTCCAGGTCAGTAGAGCATAACTGTATAACCCTAC
TCAAGAATCAAGTCTCACTAGGAGGCAAAATGAGAGTAAAAACAACACCA
CCACCAACAAAAACAAACAAACCTACCACTTACTTAACACCTACTAAGTA
CCGAGTTTATCACCTACCAAACGCCTAGCACTTTACATACAGTATTTTAG
CTAGATATTATAAACAATAGATGTTTACTAATAAAAGGGTGAGCAAAGCC
AGGTACATTATAGTTACAGTTAGACATGGAGGCATGACTTTATGGTGGCA
TTAGGGAGGTAGAAGCAGGCATATCTCTGTGAGCACAAATCCAGACTGAT
CTACATGTANCAAGTGGNCAGCCAGCTAGCGTTACACAATGAGACTGTCT
CACGTATGTAAGTAACTATTGTAGCAAGTAATAAAGGAATGAATGAAAAA
AAATGAGGAAAATAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_e14.g1 MSMg01no371_e14.g1 CHROMAT_FILE:
MSMg01no371_e14.g1 PHD_FILE: MSMg01no371_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:39 2005
         (552 letters)



>mm_chr9_40214106_40215057
          Length = 952

 Score = 1060 bits (548), Expect = 0.0
 Identities = 548/548 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatatgcatagaatgtatttggatcatatctagcatccactcctccacgaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatatgcatagaatgtatttggatcatatctagcatccactcctccacgaat 264

                                                                       
Query: 65  gttccttctccaatccctcccaacttcatgccagtgcctctttgttagtgttgttatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttccttctccaatccctcccaacttcatgccagtgcctctttgttagtgttgttatttt 324

                                                                       
Query: 125 ataccccacagagtccaaattagtgctaccccaggaaaaaggatgggcgacccccaccgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataccccacagagtccaaattagtgctaccccaggaaaaaggatgggcgacccccaccgg 384

                                                                       
Query: 185 agcatgggcaattttccctctcccagcagctatcaactgtcaatcaccctcagctcagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcatgggcaattttccctctcccagcagctatcaactgtcaatcaccctcagctcagtg 444

                                                                       
Query: 245 aggtctcatgagacccttccgtgcctttgcttccaggtcagtagagcataactgtataac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggtctcatgagacccttccgtgcctttgcttccaggtcagtagagcataactgtataac 504

                                                                       
Query: 305 cctactcaagaatcaagtctcactaggaggcaaaatgagagtaaaaacaacaccaccacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctactcaagaatcaagtctcactaggaggcaaaatgagagtaaaaacaacaccaccacc 564

                                                                       
Query: 365 aacaaaaacaaacaaacctaccacttacttaacacctactaagtaccgagtttatcacct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacaaaaacaaacaaacctaccacttacttaacacctactaagtaccgagtttatcacct 624

                                                                       
Query: 425 accaaacgcctagcactttacatacagtattttagctagatattataaacaatagatgtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 accaaacgcctagcactttacatacagtattttagctagatattataaacaatagatgtt 684

                                                                       
Query: 485 tactaataaaagggtgagcaaagccaggtacattatagttacagttagacatggaggcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tactaataaaagggtgagcaaagccaggtacattatagttacagttagacatggaggcat 744

                   
Query: 545 gactttat 552
           ||||||||
Sbjct: 745 gactttat 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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