Query= MSMg01no371_k04.b1 MSMg01no371_k04.b1 CHROMAT_FILE:
MSMg01no371_k04.b1 PHD_FILE: MSMg01no371_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:09 2005
(551 letters)
>mm_chr9_122257742_122258698
Length = 957
Score = 733 bits (379), Expect = 0.0
Identities = 438/463 (94%), Gaps = 10/463 (2%)
Strand = Plus / Minus
Query: 1 agtaacaaaactccaaagtctccaactcctgtggcactttcaagaagttgggctggcaaa 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agtaacaatactccaaagtctccaactcctgtggcactttcaagaagttgggctggcaag 404
Query: 61 aatgcacccttggaaatcttcatggaccctaggcttgctctagagtgtggctactgagca 120
|||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 403 aatgtacccttggaagtcttcatggaccctaggcttgctctagtgtgtggctactgagca 344
Query: 121 ctgaaaacaaacaaaaagcacaccattaatctaaagctggttctgcgtggaaactgatgg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 343 ctgaaaacaaacaaaaagcacaccattaatctaaagctggttctgtgtggaaactgatgg 284
Query: 181 agctgtgcccagggatatggaatttgatgaccttccctaagtc------cactcgatttg 234
||||||| |||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 283 agctgtgtgcagggatatggaatttgatgaccttccctaagtccggggacactcaatttg 224
Query: 235 gcttcaccttgatgctaattgtc----ttagggttttactgctgtgaacagacaccatga 290
||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||
Sbjct: 223 gcttcaccttgatgctaattgtcttagttagggttttactgttgtgaacagagaccatga 164
Query: 291 ccaaggcaactcttgtaaggacagcttataattggggctggcttacaggttcagaggttc 350
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 163 ccaaggcaactcttgtaaggacaggttataattggggctggcttacaggttcagaggttc 104
Query: 351 aatcccttatcatcaaggtgggaacatggcagtatccaggcaggcatggtgcagaaggag 410
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 103 aatcccttatcatcaaggtgggaacatggcagcatccaggcaggcatggtgcaggaggag 44
Query: 411 ctgagagttctacatcttcatctgaaggctgctagcagaatac 453
||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 43 ctgagagttctgcatcttcatctgaaggctgctagcagaatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 957
Length adjustment: 10
Effective length of query: 541
Effective length of database: 947
Effective search space: 512327
Effective search space used: 512327
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_k04.g1 MSMg01no371_k04.g1 CHROMAT_FILE:
MSMg01no371_k04.g1 PHD_FILE: MSMg01no371_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:09 2005
(488 letters)
>mm_chr9_122048387_122049276
Length = 890
Score = 893 bits (462), Expect = 0.0
Identities = 480/486 (98%), Gaps = 2/486 (0%)
Strand = Plus / Plus
Query: 5 gaattcagttatgggttctctctttttctttgttattttatttgattttaactgaccctt 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttatgggttctttctttttctttgttattttatttgattttaactgaccctt 264
Query: 65 tgtgatgtgatgtagataaatacaaaattagttccacaaagtcttctttctgttaatatg 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 tgtgatgtgatgtagataaatacaaaattggttccacaaagtcttctttctgttaatatg 324
Query: 125 ctcttatgccaaagttagtgatgttttgacaaaatgatcctagataagctgtgccattgt 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctattatgccaaagttagtgatgttttgacaaaatgatcctagataagctgtgccattgt 384
Query: 185 tctttatgggtcttggctccttttgccttaaggcttagttctgttgtcattatattcttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctttatgggtcttggctccttttgccttaaggcttagttctgttgtcattatattcttg 444
Query: 245 attcttcagggaatcagattttggtttcacttattaaccacacctttgttttctatgtga 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attcttcagggaaccagattttggtttcacttattaaccacacctttgttttctatgtga 504
Query: 305 ttttttttt-cttttcgtgatatttctcagctctgagtttcctctgttcttgtatgattt 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttttttttcttttcgtgatatttctcagctctgagtttcctctgttcttgtatgattt 564
Query: 364 cttggaaacctctttagtgtct-catttctaacattttttaaaaataatcctttatggag 422
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttggaaacctctttagtgtcttcatttctaacattttttaaaaataatcctttatggag 624
Query: 423 gatttgtgaatggtactccatgtctttgtctatctagaaatctgctcaaaataatacttt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatttgtgaatggtactccatgtctttgtctatctagaaatctgctcaaaataatacttt 684
Query: 483 ggttgg 488
||||||
Sbjct: 685 ggttgg 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 890
Length adjustment: 10
Effective length of query: 478
Effective length of database: 880
Effective search space: 420640
Effective search space used: 420640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
