BAC Information

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BAC

Clone NameMSMg01-371N17
Chromosome9 (Build37)
Map Location 26,913,323 - 26,913,686
singlet/doubletsinglet
Overlap geneJam3
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3
Downstream geneIgsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371N17.T7 (MSMg01no371_n17.b1)MSMg01-371N17.TJ (MSMg01no371_n17.g1)
ACCAG478260AG478261
length7771,608
length of high quality
(start - end)		447 (77 - 523)---
definitionCHROMAT_FILE: MSMg01no371_n17.b1 PHD_FILE: MSMg01no371_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:27 2005CHROMAT_FILE: MSMg01no371_n17.g1 PHD_FILE: MSMg01no371_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATAGAGACAAGGCTGGCCTGG
AACTCACAGAGGTCTGTCTGTCTGTCTCTGCCTTCCAAGTGCTGGGATTA
AAAGTGTGCACCACCACACCCTGTCTATTATCATCTAAAAAATATTTATT
TGTGACTGTGAGCCTATGTACACAGGAGGATACTGCAGAGGTCAGAAGAG
GGCCCCAGGTCTCTAGGAGATGGAGTATAGATAGTTGTGTGCTGGAAATT
GAACTGCTAGCTGCAAGAGCAGTCAGTGCTCTTAGCCACTGAGCCGGCCC
TCCAGCCCCTACTTCCCTGTATGGACTAGCCAAGAATGTTCAGGATGGCT
GTTGTGTTGGGTAGACTAGCAACACACTCTGCAGGTTACATTGGCTGTCA
TCTGTTTCCTGCCTATCCTTGTATCTATACAACAAAGAAAGCTCATATAA
TAGATACGGGTGTCTAAGGGAAGGTGTGTTCTCTGTACTGAAATCCTTAC
TAATTTTTTCATTGGGTTTTCGGGCAGACACTCTTCTTGGAAAGTTTAAC
TTATAAATTTAACCTATTTTTCTCCCATGGGCCCCCAGGTTTCGATATTT
CTTTTCTCCTTATTACCTTTCCTACCCATGCCCCCTGGATTTAACTTTTC
CAAACTCCCCTCGTCTTCCTTCCTTACTGTACTTTTCTCAATCCTCACTT
CCCTCGCCCCTCTCCTATTCTTCTGCT

ATCGTGCTGCGTTTTGTGTTTGTGGGTTGACGTGGAGCGTGGAGTGCTGG
TGGAGCTCGTCGTTATTAGTACGTGTGGATGTGCTGCTGTACTGTTGTGG
CTGTCGTCTCTACTATCGATGCCTTCCTCTTCTAGATTTTCTTCCCACCT
TTACTGCCTCTCTTCTTCATTTCCTTACGATGTTCGAGTTCTAGTGATGT
AATGGTNGGAGCCGCGATGTGCTTTCTTACGGTGCTGTATCTCTGCGTGA
GCACGCAGTTACGCGCCNATCTACTTATTGCNTGTGATATAGTCTGTCTC
GNACGGCGCTTTTGTTCATGTTGGTGCACCGCTTCGTTCGANTCTTGGTA
GTTNCGCTGCGCTGGTGATATGAGTGTGTGTACTGGCGATTACGTAGCAG
GCGGGTATGCGCTGTCTATGTTCTACTTGTCCGCACTGCATGCTCTGCTG
TGCAGTCTCTGCTGCTTGATTGGTNCTGTGTCAGATGCGTCTCCGTCTCT
CTATTTTATCTGTTTCGATATTTCTGATGTCGGTATACGTTGCCGCTATT
CTCGTTCGAGTGTACGGACGTCTTTCTAATGATGTTTCATTATCTCTCTT
GCAATGCGTCNATGTGATNGTCAGTGCTCTCGAGCGCTGCTTNCTGCTCG
TTGTTGCGACGTGCAGTGTGCGCTTCCGTGCAGTCGTTATCTCCTATCCT
TATTAGATCCATGCGTCGTCGTGCGCTGCTCGCTCTCTGCGTGCTGTGCT
CGTCTCTCTTCGTATCCCGTTCTCCTAGCCGCGAAGTTCGGCGCCTATCA
GGGCGTCGTGANTCGNCTCTCCTTACAGTTCTCTCTATATCTCTCTTTAT
CTCTTCGTACTTGTNCGCTGTTTGTGCGCGCTNTGCGCGTAGGGTTGTAA
TACGTATCTATCTCGCTCTCGCTGTCTCTATCTACCGTCTCTGTTATTAT
TCTATTATCTCTGCCTTACTCATATCGTAGTTTGTGATGCATTNTCAACG
ATTTATGTGCGTGATACAGTGTNTGCGTCTCGATGTATCACCAGATACCT
TGATACTAATACGTCCCCGTTCTGTGTTATTACTATACTCTCGTATTCAT
GTCGTTCTCTCTTCTTGTTATCGCCTCGTTCTGTCTTCCATTCTCTTGTC
ATCTATTGCGTGTGCACTCTCGCATGTGTGTGTGTACGGAGCCNGTAAGT
TGCCGCCTCTCTTATAGCACTTATGCCTCTCTGTACTGACACACGTGTTC
NCGTGTCGTCTCTATGTCATGTCTACCTAATGATCACCGTTATGCTTCGA
CTTAGACCACGTCATCTCCTCTGTGGACCGTGTCTGTGTCTCTCAGTCAG
CGCTGTTATGCCTCCTCTATCCCGCCATGCACTTCCACCGCTGCGTCTCT
AGTCTCCTGCTCGCGCTGTGTATGCATGACTGTCTGCATCTGTATTCTCT
CTCCACTTCATTCGCAGTAGTAGCATATCGTATTACCGCGCATCATAGAA
TATGCGACTGTCCTCGTATCGACTAGCNACGTCATATGTTGACTGCTGTA
TGATCTCGCACGACGCNCGCGCTGCTATGTCACTCGTCGTTCTCGTATTN
AGTTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_n17.b1 MSMg01no371_n17.b1 CHROMAT_FILE:
MSMg01no371_n17.b1 PHD_FILE: MSMg01no371_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:27 2005
         (447 letters)



>mm_chr9_26912840_26913686
          Length = 847

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 84  accaccacaccctgtctattatcatctaaaaaatatttatttgtgactgtgagcctatgt 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 accaccacaccctgtctattatcatctaaaaaatatttatttgtgactgtgagcctatgt 788

                                                                       
Query: 144 acacaggaggatactgcagaggtcagaagagggccccaggtctctaggagatggagtata 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 acacaggaggatactgcagaggtcagaagagggccccaggtctctaggagatggagtata 728

                                                                       
Query: 204 gatagttgtgtgctggaaattgaactgctagctgcaagagcagtcagtgctcttagccac 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gatagttgtgtgctggaaattgaactgctagctgcaagagcagtcagtgctcttagccac 668

                                                                       
Query: 264 tgagccggccctccagcccctacttccctgtatggactagccaagaatgttcaggatggc 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgagccggccctccagcccctacttccctgtatggactagccaagaatgttcaggatggc 608

                                                                       
Query: 324 tgttgtgttgggtagactagcaacacactctgcaggttacattggctgtcatctgtttcc 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgttgtgttgggtagactagcaacacactctgcaggttacattggctgtcatctgtttcc 548

                                                                       
Query: 384 tgcctatccttgtatctatacaacaaagaaagctcatataatagatacgggtgtctaagg 443
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 547 tgcctatccttgtatctatacaacaaagaaagctcatataatagatgcaggtgtctaagg 488

               
Query: 444 gaag 447
           ||||
Sbjct: 487 gaag 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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