XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTACATTACTTTATACATTTTAATTGGTTGCATATATTAACATGTACTAT
AAGATTCTTTTCTAAGAAGCATTACATAATAAATGGATACTGTAAAAAAA
TCTGATTAGTTAAAAGTAACAAGCATTAACAAATACATACAAAACAGCCT
GCTCAGAACGGAGCCTGGGCACCAGCCTTCCCACAGGACCTTCAAGGAGG
GAGGGGTAAAAGACCACAAGACCATTAAAAAAAATCAGATAATTAGACAC
AGATGAACTGTGAACAGTTCTCTCACTCTCCAGTGGACAAAAAGAGTAAG
CTTTCCATGCCCACTGCACCCCAGAGCACCCAGGGTCTCTGTCATATTAT
GCCTGCCATACACAGGGCTCACGGGGAGGGGGGGCAGCTGCCCCAGGAGC
CCTGACAGGCACAGGCTGGAGTTTGCTTGCTGTGTGTTGTGTGTATGTGT
TTGTGTGTGCATGAGTGTGTTTTGTGTATGTGTGTGTGTTGGATAACTGT
TTGGTGGAGCCTCTTTCTCCCCTTGCCNTTCTACATTTCTCCCTCTTTTA
CACTATTTAATCACCTTCTCTTCCCATTCAATTATCTATCAACTCATTTT
TTTTCTTCCTCTTCATTACCGCCTATTTATCTCCTCCTCTCCCACCTCTT
TCATCTTATAACCCGTTGTTAATATTACTTTCACCACCTACTTCTTCAN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATG
GGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATCATG
TGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTT
TCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAG
GATAGATGATTGCTTTAATGTGATCTTGGATTCGGTTAGCGAGAATTTTA
TTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTC
TATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTT
CATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGT
TTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGC
ACTAAACCCGTCTGGTCCTGTGCTTTTTTTGGCTGGGAGACTATTTATAA
CTGCTTCTATTTCTTTAGGCGATATGGGACTGTTTATAAATGCTCCTTGA
TCCTGATTCATCTTTGGTATCCGGTATCTGTCCACAAACTTTTCCATCTC
CCCAAGTCTTTCAGCTCTGCAGAAAAAATCCCTTTTTATAATATATTTTA
TTTTTTCCCTTATTTTTCTCCCCCCCCTTACTTTATTTTTAATTCCCTCT
CTTTTTTTTTTTT

Query= MSMg01no372_h13.b1 MSMg01no372_h13.b1 CHROMAT_FILE:
MSMg01no372_h13.b1 PHD_FILE: MSMg01no372_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:13 2005
         (500 letters)



>mm_chr9_54671623_54672522
          Length = 900

 Score =  857 bits (443), Expect = 0.0
 Identities = 485/501 (96%), Gaps = 4/501 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttacattactttatacattttaattggttgcatatattaacatgtactataa 63
           ||||||||||| | || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttatactaatttacacattttaattggttgcatatattaacatgtactataa 263

                                                                       
Query: 64  gattcttttctaagaagcattacataataaatggatactgtaaaaaaatctgattagtta 123
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 gattcttttctaagaagcattacataataaatggatactgtaataaaatctgattagtta 323

                                                                       
Query: 124 aaagtaacaagcattaacaaatacatacaaaacagcctgctcagaacggagcctgggcac 183
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 aaagtaacaagcattaagagatacatacaaaacagcctgctcagaacggagcctgggtac 383

                                                                       
Query: 184 cagccttcccacaggaccttcaaggagggaggggtaaaagaccacaagaccattaaaaaa 243
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 cagccttcccacaggaccttcaaggagggaggggtaaaagaccataagaccattaaaaaa 443

                                                                       
Query: 244 aatcagataattagacacagatgaactgtgaacagttctctcactctccagtggacaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatcagataattagacacagatgaactgtgaacagttctctcactctccagtggacaaaa 503

                                                                       
Query: 304 agagtaagctttccatgcccactgcaccccagagcacccagggtctctgtcatattatgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 504 agagtaagctttccatgcccactgcaccccagagcacccagggtctctgccatattatgc 563

                                                                       
Query: 364 ctgccatacacagggctcacggggagggggggcagctgccccaggagccctgacaggcac 423
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 564 ctgccatacacagggctcacggggaggggggacagctgccccaggagtcctgacaggcac 623

                                                                       
Query: 424 aggctggagtttgcttgctgtgtgt----tgtgtgtatgtgtttgtgtgtgcatgagtgt 479
           |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||
Sbjct: 624 aggctggagtttgcttgctgtgtgtgtgttgtgtgtatgtgtttgtgtgtgcatgagtgt 683

                                
Query: 480 gttttgtgtatgtgtgtgtgt 500
           |||||||||||||||||||||
Sbjct: 684 gttttgtgtatgtgtgtgtgt 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)