BAC Information

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BAC

Clone NameMSMg01-372K09
Chromosome9 (Build37)
Map Location 71,892,987 - 71,893,357
singlet/doubletsinglet
Overlap geneTcf12
Upstream geneLOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
Downstream geneEG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372K09.T7 (MSMg01no372_k09.b1)MSMg01-372K09.TJ (MSMg01no372_k09.g1)
ACCAG478863AG478864
length726767
length of high quality
(start - end)
569 (68 - 636)375 (71 - 445)
definitionCHROMAT_FILE: MSMg01no372_k09.b1 PHD_FILE: MSMg01no372_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:26 2005CHROMAT_FILE: MSMg01no372_k09.g1 PHD_FILE: MSMg01no372_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGTCTCCTCACCTAAACATGATAAAAGCAATCTACAACAAACCAG
TAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGTCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATACATAAGTGTTCCTAAATATTCCACCAGAGAACTCCTAAACCT
GATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGT
CAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTGGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGCCTC
TGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATGGGCAGGATCAACATTATAAAAATGGCTATCTTGCCTAAAGC
AATCTACAGATTCAATGCAATCCCCATTAAAATTCCAACTCAATTCTTCA
ACGAACTACAAGGAGCATTTTGTAAA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGCAAGCCAGAGCTATATAGTGATAACC
TGTCTCCAAGAAAACAAAACAAAACAAACAAAAAAACCCAGAAATTTGAA
AACAAAAATCAATTGGCTCTTGGTAACAGGACAACTCACATTGCTGGAGC
CAATATGTGGATGTATATGTCTAAGTACCAGTGGCCAATGAGCCAAAATC
ATCAATCAATATTTCTTAAGAAGAATGAATTAATATGGCTGGTTAGCAGA
TTTCAATGTCTTTATATTCTACATGATTAAATGAAATATGTAGGTAAGAA
TCTGACACAAATAAAATACCCAATAAGTATTTAGGGTTAGCACTAAAAGG
AAGCAAACCAGATACTTACATGTCACTTCTATAAGAACCAATTGATGTCA
TTTAAATAATCTCCTCGATGCACAAAGTAGGAATACTACCTGGGAATATT
CACATAATGCTAGCTAACCTTTCCATATGGGAACACAAAAAAATTTTAAT
ATTTTAGGGGCCATTTAAAGCCTCCTAAAAATCACAAAAAAACCCCAAAA
TCCTAAAAAAAAACAAAAGCCCCCCTAAGCCCCCATTTCCCCTCCCCCTT
GGGAAGGGCCACAAAAAAGNAAAACCCTTCCCCTTTTTCCTTAAGAAAAG
CCCCCTTATAATTTAGGAGGGCTTTTTTCCCTTCCCTCCCCCCCCTTTGT
TCTCCCAAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_k09.g1 MSMg01no372_k09.g1 CHROMAT_FILE:
MSMg01no372_k09.g1 PHD_FILE: MSMg01no372_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:26 2005
         (375 letters)



>mm_chr9_71892787_71893561
          Length = 775

 Score =  710 bits (367), Expect = 0.0
 Identities = 370/371 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcaagccagagctatatagtgataacctgtctccaagaaaacaaaacaaaacaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcaagccagagctatatagtgataacctgtctccaagaaaacaaaacaaaacaaaca 260

                                                                       
Query: 61  aaaaaacccagaaatttgaaaacaaaaatcaattggctcttggtaacaggacaactcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaacccagaaatttgaaaacaaaaatcaattggctcttggtaacaggacaactcaca 320

                                                                       
Query: 121 ttgctggagccaatatgtggatgtatatgtctaagtaccagtggccaatgagccaaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctggagccaatatgtggatgtatatgtctaagtaccagtggccaatgagccaaaatc 380

                                                                       
Query: 181 atcaatcaatatttcttaagaagaatgaattaatatggctggttagcagatttcaatgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaatcaatatttcttaagaagaatgaattaatatggctggttagcagatttcaatgtc 440

                                                                       
Query: 241 tttatattctacatgattaaatgaaatatgtaggtaagaatctgacacaaataaaatacc 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagattctacatgattaaatgaaatatgtaggtaagaatctgacacaaataaaatacc 500

                                                                       
Query: 301 caataagtatttagggttagcactaaaaggaagcaaaccagatacttacatgtcacttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caataagtatttagggttagcactaaaaggaagcaaaccagatacttacatgtcacttct 560

                      
Query: 361 ataagaaccaa 371
           |||||||||||
Sbjct: 561 ataagaaccaa 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)