BAC Information

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BAC

Clone NameMSMg01-372K21
Chromosome9 (Build37)
Map Location 40,916,647 - 41,059,836
singlet/doubletdoublet
Overlap gene2810457I06Rik, LOC628495
Upstream geneOlfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam
Downstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372K21.T7 (MSMg01no372_k21.b1)MSMg01-372K21.TJ (MSMg01no372_k21.g1)
ACCAG478887AG478888
length790797
length of high quality
(start - end)		414 (66 - 479)408 (66 - 473)
definitionCHROMAT_FILE: MSMg01no372_k21.b1 PHD_FILE: MSMg01no372_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:29 2005CHROMAT_FILE: MSMg01no372_k21.g1 PHD_FILE: MSMg01no372_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,059,442 - 41,059,836)(40,916,647 - 40,917,054)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCTGGC
CCTGTTCCAAGATACATGAGGCAAGAATAATTGGCTCAAATGTATTCAAT
CCCCAGTCTGCCCTGTGGATTTCAAACTTGCCTAGCCAGTCCTCACACTA
GTACAGAACATTTTCTTATACTTCTTAACTGGCTCTGTTTCTCTGGATGA
ACCTAACAGCCATTGCTCATACTGAAAAGAGAAGGCAAGGGAAGAAAGGA
GAAAAGAGATGAAGGAAGAGAGAAGAGCAGACAACACTGGGGTCACCCAG
ATGGGGCGACTTAGAACCACTGATGGGAGATTACTCAATAAGGAAGTGAG
CAGTGTGCTTTCTTCCACGTTTCTATCATTTTCCCATGAGAAGCTGAGCC
TATGTATTCCACATCTCTTTGACAGTCTTGTATTACATCCTTCATACTGC
CCCAGGTTCTTCTCTTGAGAACTTGTAGACTTGTAGATAGGTTTCTTTGC
CTGTAACCCATCCTCCAATAGCTAAGATTTAAAAAAGCTGGTTAGATATT
TCCAGGGAGCTTAGAACACACACCCTCACACTCAGTGTGGTTGTTGAGGT
AAAAATAATCTCATTTTTCCCTCTCTATTCCTCTTTTTTCACCCCTATCT
CCCCTATCCCCCCTTTTTTCTCCTCGTCTCTTTCTCACCCCCTATTTCCC
ATCTTTTTTTCCCCTCCCCCTCTCTCTCTTTTTCCCCCTTATTCACCCTT
CATTTTCTTCTTTCTTCCCCCCATTATTTTTTCTATACTC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATTGCTGACTTTGGCACTCGCTGCTGGTATCTGA
GAACAACAGATTCAACTAGAAAGGAAGGAGCAGATGCTGTAAATCACTCC
TCATTTCCACACCCCCTGCCATGCCCCAAATTATTTGACAGTGCACAGCA
AAGCAGGGGGAAAGCTGGCATGACGACTTCCAACTTGGCTCCAAACCAAG
AGGAAGCTGTGGGTTCCCTGTCTAGGTGGTCTTTTGTCTGAGATGGGTAT
TGCATGGAAAACTCAGCTGGACATACATAGAGATGGACAACAGGAACCCT
GGCATTTTTCCTAGCTTTGGATTCTTTACTTCCACAAGTCTTGTCCTTGA
AGTATCTGTGACAGGGCATGTCATCAAGAAGGCATCAAAGGCAGAACGAA
TATGAATTCATGTGTAATCCAGGCTGATCTTGAACTGGTGTCCCCCTCCC
TCCACCTTTCAAGGCTGGCATGACATGAGTGCATCATCACCTCTGGGAGG
ATTCCCATTTTATAGAAGGAAAAATAAAGGTTTAAGAAGAAAACCCGATT
TAACTCTTAATGGGCTCCCTGGAAAAAAAGAAAACTGAATTTTTTCCTCC
CTTGCCCAAAAAATTTATAAATATTCTATTGAACCCCCCCCGGAAAAAGA
AAAATTCCCCCCTGAGGGCCCTTCCTCCCCCGACAAGGGAGGGGGCCCTT
CTTCAAAGGGATTAAAAAAATAATTCGAAAATTCTTTCTTTATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_k21.b1 MSMg01no372_k21.b1 CHROMAT_FILE:
MSMg01no372_k21.b1 PHD_FILE: MSMg01no372_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:29 2005
         (414 letters)



>mm_chr9_41059023_41059836
          Length = 814

 Score =  764 bits (395), Expect = 0.0
 Identities = 395/395 (100%)
 Strand = Plus / Minus

                                                                       
Query: 20  ctcaaatgtattcaatccccagtctgccctgtggatttcaaacttgcctagccagtcctc 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ctcaaatgtattcaatccccagtctgccctgtggatttcaaacttgcctagccagtcctc 755

                                                                       
Query: 80  acactagtacagaacattttcttatacttcttaactggctctgtttctctggatgaacct 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 acactagtacagaacattttcttatacttcttaactggctctgtttctctggatgaacct 695

                                                                       
Query: 140 aacagccattgctcatactgaaaagagaaggcaagggaagaaaggagaaaagagatgaag 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aacagccattgctcatactgaaaagagaaggcaagggaagaaaggagaaaagagatgaag 635

                                                                       
Query: 200 gaagagagaagagcagacaacactggggtcacccagatggggcgacttagaaccactgat 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaagagagaagagcagacaacactggggtcacccagatggggcgacttagaaccactgat 575

                                                                       
Query: 260 gggagattactcaataaggaagtgagcagtgtgctttcttccacgtttctatcattttcc 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gggagattactcaataaggaagtgagcagtgtgctttcttccacgtttctatcattttcc 515

                                                                       
Query: 320 catgagaagctgagcctatgtattccacatctctttgacagtcttgtattacatccttca 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 catgagaagctgagcctatgtattccacatctctttgacagtcttgtattacatccttca 455

                                              
Query: 380 tactgccccaggttcttctcttgagaacttgtaga 414
           |||||||||||||||||||||||||||||||||||
Sbjct: 454 tactgccccaggttcttctcttgagaacttgtaga 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_k21.g1 MSMg01no372_k21.g1 CHROMAT_FILE:
MSMg01no372_k21.g1 PHD_FILE: MSMg01no372_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:29 2005
         (408 letters)



>mm_chr9_40916447_40917254
          Length = 808

 Score =  789 bits (408), Expect = 0.0
 Identities = 408/408 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgctgactttggcactcgctgctggtatctgagaacaacagattcaactagaaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattgctgactttggcactcgctgctggtatctgagaacaacagattcaactagaaagga 260

                                                                       
Query: 61  aggagcagatgctgtaaatcactcctcatttccacaccccctgccatgccccaaattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagcagatgctgtaaatcactcctcatttccacaccccctgccatgccccaaattatt 320

                                                                       
Query: 121 tgacagtgcacagcaaagcagggggaaagctggcatgacgacttccaacttggctccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacagtgcacagcaaagcagggggaaagctggcatgacgacttccaacttggctccaaa 380

                                                                       
Query: 181 ccaagaggaagctgtgggttccctgtctaggtggtcttttgtctgagatgggtattgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaagaggaagctgtgggttccctgtctaggtggtcttttgtctgagatgggtattgcat 440

                                                                       
Query: 241 ggaaaactcagctggacatacatagagatggacaacaggaaccctggcatttttcctagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaaactcagctggacatacatagagatggacaacaggaaccctggcatttttcctagc 500

                                                                       
Query: 301 tttggattctttacttccacaagtcttgtccttgaagtatctgtgacagggcatgtcatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttggattctttacttccacaagtcttgtccttgaagtatctgtgacagggcatgtcatc 560

                                                           
Query: 361 aagaaggcatcaaaggcagaacgaatatgaattcatgtgtaatccagg 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaaggcatcaaaggcagaacgaatatgaattcatgtgtaatccagg 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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