BAC Information

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BAC

Clone NameMSMg01-372L10
Chromosome9 (Build37)
Map Location 93,704,526 - 93,705,062
singlet/doubletsinglet
Overlap geneLOC674371
Upstream geneLOC100040114
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372L10.T7 (MSMg01no372_l10.b1)MSMg01-372L10.TJ (MSMg01no372_l10.g1)
ACCAG478913AG478914
length743753
length of high quality
(start - end)
361 (62 - 422)537 (72 - 608)
definitionCHROMAT_FILE: MSMg01no372_l10.b1 PHD_FILE: MSMg01no372_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:31 2005CHROMAT_FILE: MSMg01no372_l10.g1 PHD_FILE: MSMg01no372_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGTGTACAGATTCGGACACCAACCCAGCCACAAAACCTGTGATGCATAA
TTAATTATTTTTTTTCCTATAAGATGTGCTAGGGAAAATTTTGGGAGTAT
CTAACCATGACTGGTCCAGGCTGAACCTCATGCCCTGAGAGAGAATCTAC
TCCTGACACTGCCTGGAGATTCAGGAACCAGATAATAGCTCAGAGACCTA
AGACAGAAGCAAATAAGACTGGCAAAAACACAAAAGTCAATGAAATGATT
CTGTTCAGTGCCAGGGTAAACAGAGGAGGGCAGAGTGTGGAATCGGTGAT
TAGTCACTCAGAAGACTTCTAAGGGAGCAAAACTTAATTCTCCAGGGACA
GCAAGAAAGGGGAAAAGTCACACACACACACACACACACACATTCACACA
CACTCACTCATTCACACTCAGACACTCACACTATGTGGATGAATCATGTT
TCTTCAAGTCCCATTAACCTCATTCTTACACATATAGCCAGATATGCATA
TAGACAGACATATTGGAATGATAGAGCTAGGTTACAACCTTCAAGCTCCA
ACTATTTTTTTCTCTTTTCTTTTCTTTAATGTCTAATATATACTTTTTTT
ATCGCAAAAATAATATTACTTTCTTAGTCACAAATTTATACATTTTCCTT
AAAACACTCTCTTCCCACCACATATTTCTCCACAAATTTAATN
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAAGTTCACATTTAAATCTAGAGCAATG
GTGAATAAAATAAAGGAGGAATTCAGGGTCTGCAGGAGAAAGTCAACAAC
ATAGATGAGAAGGGAAGCACAGAAGATGAACCAGAATGTGAACACTTCAG
AAAGAAGATGAGATTTGAGGGAAAAATGACAGAGTTGGGTGTGAAGAAAA
TGTATTTGGAAATGAAAAATCTAATCAATCAAATCAAAAATGCAGAGTAA
AGCATCATCATTAATGTAGACAGCAACAGAAAGAATATTAAATATAGTAG
ACAGGATCAATTTTCTAGAACATTCAAGTCCAAAATCATCAAGATAAAGA
ACAATAAAACCTGTCGGGCATGGTGGTGCACGCCTTTAATCCCAGCATTT
GGGAGGCAGAGGCAGGCAGTTTTCTGAGTTCAAGGTCAGCCTGGTCTACA
GAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCANAA
CAAAACAACACAAGACAAAAACGAACAAACAAAAGAACAATAAAACCTAG
ACTAAGCAAGCAAAATGACTCAGTGGCTAAATGTTCTTGATACTCAGCCT
GATGATAAGAGTTTGATCCCTGAAACTCCTATGATTAGAGAAAATAAACA
ACTCCCTTCAGTTGGCCTGGGGATTCCACTGGTGGGTGGGGGGGTGGGGG
GCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_l10.g1 MSMg01no372_l10.g1 CHROMAT_FILE:
MSMg01no372_l10.g1 PHD_FILE: MSMg01no372_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:31 2005
         (537 letters)



>mm_chr9_93704522_93705458
          Length = 937

 Score =  986 bits (510), Expect = 0.0
 Identities = 530/537 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagttcacatttaaatctagagcaatggtgaataaaataaaggaggaattcagggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaagttcacatttaaatctagagcaatggtgaataaaataaaggaggaattcagggtct 482

                                                                       
Query: 61  gcaggagaaagtcaacaacatagatgagaagggaagcacagaagatgaaccagaatgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcaggagaaagtcaacaacatagatgagaagggaagcacagaagatgaaccagaatgtga 422

                                                                       
Query: 121 acacttcagaaagaagatgagatttgagggaaaaatgacagagttgggtgtgaagaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 421 acacttcagaaagaagatgagatttgagggaaaaatgacagagttgggtgtgaagaaaac 362

                                                                       
Query: 181 gtatttggaaatgaaaaatctaatcaatcaaatcaaaaatgcagagtaaagcatcatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtatttggaaatgaaaaatctaatcaatcaaatcaaaaatgcagagtaaagcatcatcat 302

                                                                       
Query: 241 taatgtagacagcaacagaaagaatattaaatatagtagacaggatcaattttctagaac 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaagtagacagcaacagaaagaatattaaatatagtagacaggatcaattttctagaac 242

                                                                       
Query: 301 attcaagtccaaaatcatcaagataaagaacaataaaacctgtcgggcatggtggtgcac 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 241 attcaagtccaaaatcatcaagataaagaacaataaaacctgttgggcatggtggtgcac 182

                                                                       
Query: 361 gcctttaatcccagcatttgggaggcagaggcaggcagttttctgagttcaaggtcagcc 420
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 181 gcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcaaggtcagcc 122

                                                                       
Query: 421 tggtctacagagtgagttccaggacagccaggactacacagagaaaccctgtctcanaac 480
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 121 tggtctacagagtgagttccaggacagtcaggactacacagagaaaccctgtctcaaaac 62

                                                                    
Query: 481 aaaacaacacaagacaaaaacgaacaaacaaaagaacaataaaacctagactaagca 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaacaacacaagacaaaaacgaacaaacaaaagaacaataaaacctagactaagca 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)