BAC Information

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BAC

Clone NameMSMg01-372L13
Chromosome9 (Build37)
Map Location 55,380,459 - 55,552,873
singlet/doubletdoublet
Overlap geneIsl2, Zfp291
Upstream gene4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133
Downstream geneLOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372L13.T7 (MSMg01no372_l13.b1)MSMg01-372L13.TJ (MSMg01no372_l13.g1)
ACCAG478919AG478920
length738741
length of high quality
(start - end)		506 (63 - 568)485 (70 - 554)
definitionCHROMAT_FILE: MSMg01no372_l13.b1 PHD_FILE: MSMg01no372_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:32 2005CHROMAT_FILE: MSMg01no372_l13.g1 PHD_FILE: MSMg01no372_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,552,403 - 55,552,873)(55,380,459 - 55,380,943)
sequence
TCTACATGTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGATTACAAGATGAATTAGATCATTCATAAATCAACAAAATTAAATAG
TAAATAATTGTACATTTATATTTCTCACAGTATTATTTATAGTAGCTAAG
AATTAGCCTAGGTGTCTATCAACAGAGAATGAATATATAAAATGTGATAA
TAGACACAATGAAAATTTATTTCAGGCAGAAGAATGAAATAGTGATACTT
TTTAAAAAATTGATTCAACTAGAAATTATTAGTTAGAAAATTAATTCAGA
GTCAGAAACAGACTTATCATGTTCTCTATCATTCATGGATCCTAAACATT
CTATAGACATGTAAAACTGTATATATGACATGCAAGGAGAAGTAAAAGAG
TCTAGAGGAATGAATAGTTCTAAAAGGAGTGTGGTATGGGTGATACAGAA
GAAATGTAGAGTGTTTAGGACGGGACAGAGTTCAAGTTTCTTATATACTT
GTATGAAAATGTCTTTATGGGGGCTGGAGAGATGGCTCAGTGGGTAAGAG
CACTGACTGCTCTTCCAAAGGTCCTTAGTTCAAATCCCAGCAACCACACA
GTGGCTTACAACCACCCGTAATGAGATCTGATGCCCTCTTCTGGTGCGTC
TGAAGATGGCTACAGTGCACTTACGTATAAAAATAAAATTAATCTTTAAA
AAAAGAATAGAATATAAGATGTCTTTATGATATGTCCN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTGTCCCTGAGACTGCTGTCAGAACCCT
ACCCCTTGTCTGTCATAAACAATGACTCTATGCGTCTTCCTAGCCAGATT
CTTCTTGATAATGTCACTTGGTGGGCCAGGCTTGCCAGAAGCTGTAGGAG
AGGTGCACATATGCTTATGTAGCGCCACATGCTTGTAGCATTCCTTTGAA
TCTTGAGTTCATGTGGAAAAGATTTGAGTAAGTGGTGTGCAATGGATCAA
CACTGTCTACCGGGTTGTAGGGGCGGGGCTCAGTGGCAGAGTTCAGGATT
CCAGGAGAGCCTGGTATCGTCTCCAGCACGAGAGGTCACCTATTGTGTAA
CCATTTCCTTTCCATTTAATAACTGTAAGTGGAAAGTCCAATTTCCCCCT
TTAAAAAGGATTCTGAGGATTTTATACAGGGGTCCAGTATTGACATCATT
CCCAGCTTGTGCTTGCTCCACTCTAACTCCTATGCTCTCCCTCCCTCTCC
ACTCGNGACTTCTTCTTTAGTTATTATCATTCCTTATGTGACACACACAC
ACACCCCTGTGTATACAAAACAAAGCTGTTGTACCCACTTATTGCTGTTC
CGGGACAAAGCTGGCTGCACAGATGGCACTTGGTATCTTAAGATTGTTGA
CTGCCCGGTGTTCTTTCTGGTGTGGGTCCTTTTTGTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_l13.b1 MSMg01no372_l13.b1 CHROMAT_FILE:
MSMg01no372_l13.b1 PHD_FILE: MSMg01no372_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:32 2005
         (506 letters)



>mm_chr9_55551968_55552873
          Length = 906

 Score =  895 bits (463), Expect = 0.0
 Identities = 469/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 36  tagtaaataattgtacatttatatttctcacagtattatttatagtagctaagaattagc 95
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 tagtaaataattgtacatttatatttctcacagtattatttatagtagctaagaattagc 847

                                                                       
Query: 96  ctaggtgtctatcaacagagaatgaatatataaaatgtgataatagacacaatgaaaatt 155
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 846 ctaggtgtctatcaacagagaatgaatatataaaatgtgataataggcacaatgaaaatt 787

                                                                       
Query: 156 tatttcaggcagaagaatgaaatagtgatactttttaaaaaattgattcaactagaaatt 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tatttcaggcagaagaatgaaatagtgatactttttaaaaaattgattcaactagaaatt 727

                                                                       
Query: 216 attagttagaaaattaattcagagtcagaaacagacttatcatgttctctatcattcatg 275
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 726 attagttagaaaattaattcagagtcagaaacagacatatcatgttctctatcattcatg 667

                                                                       
Query: 276 gatcctaaacattctatagacatgtaaaactgtatatatgacatgcaaggagaagtaaaa 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gatcctaaacattctatagacatgtaaaactgtatatatgacatgcaaggagaagtaaaa 607

                                                                       
Query: 336 gagtctagaggaatgaatagttctaaaaggagtgtggtatgggtgatacagaagaaatgt 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gagtctagaggaatgaatagttctaaaaggagtgtggtatgggtgatacagaagaaatgt 547

                                                                       
Query: 396 agagtgtttaggacgggacagagttcaagtttcttatatacttgtatgaaaatgtcttta 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agagtgtttaggacgggacagagttcaagtttcttatatacttgtatgaaaatgtcttta 487

                                                              
Query: 456 tgggggctggagagatggctcagtgggtaagagcactgactgctcttccaa 506
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgggggctggagagatggctcagtgggtaagagcactgactgctcttccaa 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_l13.g1 MSMg01no372_l13.g1 CHROMAT_FILE:
MSMg01no372_l13.g1 PHD_FILE: MSMg01no372_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:32 2005
         (485 letters)



>mm_chr9_55380259_55381143
          Length = 885

 Score =  938 bits (485), Expect = 0.0
 Identities = 485/485 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtgtccctgagactgctgtcagaaccctaccccttgtctgtcataaacaatgactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtgtccctgagactgctgtcagaaccctaccccttgtctgtcataaacaatgactct 260

                                                                       
Query: 61  atgcgtcttcctagccagattcttcttgataatgtcacttggtgggccaggcttgccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcgtcttcctagccagattcttcttgataatgtcacttggtgggccaggcttgccaga 320

                                                                       
Query: 121 agctgtaggagaggtgcacatatgcttatgtagcgccacatgcttgtagcattcctttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgtaggagaggtgcacatatgcttatgtagcgccacatgcttgtagcattcctttga 380

                                                                       
Query: 181 atcttgagttcatgtggaaaagatttgagtaagtggtgtgcaatggatcaacactgtcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcttgagttcatgtggaaaagatttgagtaagtggtgtgcaatggatcaacactgtcta 440

                                                                       
Query: 241 ccgggttgtaggggcggggctcagtggcagagttcaggattccaggagagcctggtatcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgggttgtaggggcggggctcagtggcagagttcaggattccaggagagcctggtatcg 500

                                                                       
Query: 301 tctccagcacgagaggtcacctattgtgtaaccatttcctttccatttaataactgtaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctccagcacgagaggtcacctattgtgtaaccatttcctttccatttaataactgtaag 560

                                                                       
Query: 361 tggaaagtccaatttccccctttaaaaaggattctgaggattttatacaggggtccagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaaagtccaatttccccctttaaaaaggattctgaggattttatacaggggtccagta 620

                                                                       
Query: 421 ttgacatcattcccagcttgtgcttgctccactctaactcctatgctctccctccctctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgacatcattcccagcttgtgcttgctccactctaactcctatgctctccctccctctc 680

                
Query: 481 cactc 485
           |||||
Sbjct: 681 cactc 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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