BAC Information

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BAC

Clone NameMSMg01-372O21
Chromosome9 (Build37)
Map Location 34,449,694 - 34,450,096
singlet/doubletsinglet
Overlap geneKirrel3
Upstream geneLOC100042343
Downstream geneSt3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372O21.T7 (MSMg01no372_o21.b1)MSMg01-372O21.TJ (MSMg01no372_o21.g1)
ACCAG479079AG479080
length658799
length of high quality
(start - end)
---403 (67 - 469)
definitionCHROMAT_FILE: MSMg01no372_o21.b1 PHD_FILE: MSMg01no372_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:47 2005CHROMAT_FILE: MSMg01no372_o21.g1 PHD_FILE: MSMg01no372_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTGCCCNNNNNNNNNNNNNNNNNTTTTTTATTTGNGGCGTTAATAGA
ATCATTATGTTCAGAGGATCCGCGNAAATTCCCCCNNNGGGNNTTTTTTT
CAAGAAAGNGNNCNNCAAGACACTGAGGGAATAACGCGTTTTCATTATCT
TCCAAAATTTTTTTATTTGTTTGTTGGTTGGTCCAATTTCTGAACATTTC
CTGATCCCTTTTTTGGTTTGGGGGNNNNNCCGTTTGGTGGACCANCGGGA
GCCCTCCCCCAATGGGGGCGGTTGTGGGGGCATCNCGNNGNNATTAACAG
GAAGCTGAGAGAAGGAGAGGGAGAGGGAGGAAAGGGGGTGGAGGTGGAGG
GGTAGAGGGNNNNNNNAATGTCGAGAGGGGAAGAGGGTGCGGACCGGAGG
GAGGGGAGGCCAGGGAACAGGAAAAGAAGGCAGGGGAGGAGCGCCGGGGC
GGAGGAGAGGGGGAGAGAAGAAGGAAGGAGAGGAGAAAAAGAGAGGGGGG
GGGGGGTNNNNNNNCNCNCNCACCACAAAAAAAAATATNNCCNNCNNNCN
NNNNCCNNNNNNNNCCCNCCCCACGCAGCTTNTNTTTTNNNNNNNNNNNN
NNNNNNNNNNNNNCCCCNNTNNTCACTACTTCGAACATGCGAGCGGAGGG
GTGCAGGA
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGGCCACCCTGGGCTACAGGGTGAGACATCTTT
TCNCAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAGAAAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAAGCAAACAAT
TTAAATCAACCCCATTCTAATTTTTGGCCATGTGAACTTTGGTGATGTCT
GCTCCCTGCCTGTTACTTGCAGGTCAAGAGCTGGATCTCAAGGCCCTCCA
GCGTGGCCCTGGAATTCGAGGGTAGACAGCACCCATTCACCGTGTAAATC
CTGTATTACTGAAGGGGGTATAAGGGTGGCACGTATTTATCTCAGGTGGC
ATAAATATTTACATCGTAGAAAAACAGAAGAATGACTAGGAAACAAACTT
TCTCCTGAACGCTTCTGTGTTTCAGAGAATACATTTAGAGGCACAGAAAC
TGAATACTTTAGAAAATTCCAGAAAAGGGACTGGAGGAACAACTTGAACA
TTAAAGCATGCCAGCATGAGGACCTAAATTCCGGGCCCACCCCCACCCCT
TGTGCCTAAGTTAAAAGCCAAGGGGGGTAATATAACCCCTATTATCCCAG
CTCCGCCGGGATCCCAAAAGGGAAAGGGTCCCCGGGTAGGCCAATTGGGG
GAACTTGAACATCCCTGGAAAACCCGGGCTTCTAAAAAAGGGGGGGGTAA
AAAAATAATAAGACCCCCGGGGGTGTTTTTGGTCCCCCCCCCCCCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_o21.g1 MSMg01no372_o21.g1 CHROMAT_FILE:
MSMg01no372_o21.g1 PHD_FILE: MSMg01no372_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:47 2005
         (403 letters)



>mm_chr9_34449493_34450296
          Length = 804

 Score =  716 bits (370), Expect = 0.0
 Identities = 396/406 (97%), Gaps = 6/406 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccaccctgggctacagggtgagacatcttttcncaaaaaaaaaaaaaaaaaaaaa- 59
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 202 caggccaccctgggctacagggtgagacatcttttc-caaaaaaaaaaaaaaaaaaaaag 260

                                                                       
Query: 60  -aaaaggaaagaaagagagagagagagagagagagagagagagagagagagagagagaga 118
            |||  |||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaa--gaaagaaagaaagaaagagagagagagagagagagagagagagagagagagaga 318

                                                                       
Query: 119 gaaacaagcaaacaatttaaatcaaccccattctaattttt-ggccatgtgaactttggt 177
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 319 gaaacaagcaaacaatttaaatcaaccccattctaattttttggccatgtgaactttggt 378

                                                                       
Query: 178 gatgtctgctccctgcctgttacttgcaggtcaagagctggatctcaaggccctccagcg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gatgtctgctccctgcctgttacttgcaggtcaagagctggatctcaaggccctccagcg 438

                                                                       
Query: 238 tggccctggaattcgagggtagacagcacccattcaccgtgtaaatcctgtattactgaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 439 tggccctggaattcgagggtagacagcacccattcaccgtgtaaatcctgtattactgcg 498

                                                                       
Query: 298 gggggtataagggtggcacgtatttatctcaggtggcataaatatttacatcgtagaaaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gggggtataagggtggcacgtatttatctcaggtggcataaatatttacatcgtagaaaa 558

                                                         
Query: 358 acagaagaatgactaggaaacaaactttctcctgaacgcttctgtg 403
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acagaagaatgactaggaaacaaactttctcctgaacgcttctgtg 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 804
Length adjustment: 9
Effective length of query: 394
Effective length of database: 795
Effective search space:   313230
Effective search space used:   313230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)