Query= MSMg01no373_c11.b1 MSMg01no373_c11.b1 CHROMAT_FILE:
MSMg01no373_c11.b1 PHD_FILE: MSMg01no373_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:03 2005
(559 letters)
>mm_chr9_115108994_115109952
Length = 959
Score = 1052 bits (544), Expect = 0.0
Identities = 547/548 (99%)
Strand = Plus / Plus
Query: 12 gaattctctgggtatcattgtccccattgtgttgactgatgccaagtgtccccccaggcc 71
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattctctgggtataattgtccccattgtgttgactgatgccaagtgtccccccaggcc 271
Query: 72 ccagccccaccccttccccgggagtgccatcttcctgccttccagggtgtgttttattga 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ccagccccaccccttccccgggagtgccatcttcctgccttccagggtgtgttttattga 331
Query: 132 aaattaacctttctgcaggtcggcccctttgcttgggaagagcacctctccttccagtct 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaattaacctttctgcaggtcggcccctttgcttgggaagagcacctctccttccagtct 391
Query: 192 atgcgagccaagtgtggtaaatgtgtgtgtatgtgtggttagcccaagaaagccagctca 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atgcgagccaagtgtggtaaatgtgtgtgtatgtgtggttagcccaagaaagccagctca 451
Query: 252 gcccctgcaaggcaacagcatgattgtgacgtcagcggcagctaaagtcagcatctccag 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gcccctgcaaggcaacagcatgattgtgacgtcagcggcagctaaagtcagcatctccag 511
Query: 312 gatggcagtggggaccagcctgctgtgtgacgacacgttgtccttgcacccatccggcac 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gatggcagtggggaccagcctgctgtgtgacgacacgttgtccttgcacccatccggcac 571
Query: 372 cagagcccggcttctccatctgggtccccatcactggaacatcaccattgaacctacctc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cagagcccggcttctccatctgggtccccatcactggaacatcaccattgaacctacctc 631
Query: 432 cacatggcagaataagagcccctacctagggcagtgcctgcagaggcaagtggatcatct 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cacatggcagaataagagcccctacctagggcagtgcctgcagaggcaagtggatcatct 691
Query: 492 ggctctggaagagactccacagagaactggtacatgtgcaggagcctccaactgctgccc 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ggctctggaagagactccacagagaactggtacatgtgcaggagcctccaactgctgccc 751
Query: 552 tgcatcag 559
||||||||
Sbjct: 752 tgcatcag 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_c11.g1 MSMg01no373_c11.g1 CHROMAT_FILE:
MSMg01no373_c11.g1 PHD_FILE: MSMg01no373_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:03 2005
(537 letters)
>mm_chr9_115321662_115322597
Length = 936
Score = 1015 bits (525), Expect = 0.0
Identities = 534/539 (99%), Gaps = 5/539 (0%)
Strand = Plus / Minus
Query: 1 cctgactccctttactgatggcttgcgccctagaagcagaagccaaataaagcccttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cctgactccctttactgatggcttgcgccctagaagcagaagccaaataaagcccttcct 649
Query: 61 cccctaagttgcttttcactggacgtgcaagggctctgtgctatatgactgtaaaggggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cccctaagttgcttttcactggacgtgcaagggctctgtgctatatgactgtaaaggggg 589
Query: 121 tgtccctgtaagaccaaagcaaaccaggaaggcgggaaaatgttcagcatcaccaggggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tgtccctgtaagaccaaagcaaaccaggaaggcgggaaaatgttcagcatcaccaggggc 529
Query: 181 ctgagaaagaagagacaaacgaacagggagaatacagacatttaaggctatgaaactttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctgagaaagaagagacaaacgaacagggagaatacagacatttaaggctatgaaactttt 469
Query: 241 ta--tttacacaaaaatatgggactcagattctacaccccccatagaatgcaccccccaa 298
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tagg---acacaaaaatatgggactcagattctacaccccccatagaatgcaccccccaa 412
Query: 299 gacccagctatgaactgtgaacctaggactatggtgtctgtcttaaatttattttacagt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gacccagctatgaactgtgaacctaggactatggtgtctgtcttaaatttattttacagt 352
Query: 359 accatggtttgagccccaaccctcaaatatgctaagcaacttctctatcacagaattgta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 accatggtttgagccccaaccctcaaatatgctaagcaacttctctatcacagaattgta 292
Query: 419 ttccccaacccttctgtgttttcgactttaagacagggtctcattaagttgcccaggctg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttccccaacccttctgtgttttcgactttaagacagggtctcattaagttgcccaggctg 232
Query: 479 gccttgaactcattacattaccaggctatccttcaacttgtgatcctcctgcctcagac 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gccttgaactcattacattaccaggctatccttcaacttgtgatcctcctgcctcagac 173
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
