BAC Information

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BAC

Clone NameMSMg01-373D01
Chromosome9 (Build37)
Map Location 78,197,091 - 78,197,576
singlet/doubletsinglet
Overlap genenone
Upstream gene5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2
Downstream geneDppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456, LOC436085, LOC235509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373D01.T7 (MSMg01no373_d01.b1)MSMg01-373D01.TJ (MSMg01no373_d01.g1)
ACCAG479278AG479279
length735901
length of high quality
(start - end)		618 (36 - 653)---
definitionCHROMAT_FILE: MSMg01no373_d01.b1 PHD_FILE: MSMg01no373_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:06 2005CHROMAT_FILE: MSMg01no373_d01.g1 PHD_FILE: MSMg01no373_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCAG
GTTTTCGTTCCAAGTTTTAGTTCCAAGTTCCCATGGCTGGCCAGGTGTGC
GGCAGAAAGGCCACGATGGCTATGTGACCAACTTCCCTTGAGTGTTGGAG
ATGTGTCCCTTTGTGCAGGTGTAGAAAGGACAGTTGAGTGATTTATCATG
TGCTACTCCACCAGACTAACAAATGTCCAAGCTCTTTGTTGCAATTCCTG
GACTTTATCTGAAATAAAAATTTGATGTGTCCTTCAAATGTGTTCTTTAA
AATTACTTGGGCTTCAGAAAAGTTTCACGGGGCTGAGAGTGCAGCTTGGT
GGTATAGCCTGCTCTGCCATGCTCCCTGGAGCCTGGGGCAGAGCCCTATC
ATGGAAAAGACAAGCTCAAAGGTATAGACTCCCAAATACTGTTCCCCAGT
GTGAAGGTTAATGTAGACACCAAGACCCCTTTGTCACACCGCTCTGAGGC
TGTTTCTCTTTGTCCCTTAAAAGTTAGTGGGAAAGCCGGGGCGTGGTGGC
GCATGCCTTTAGTCCCAGCACTCGCGAGGTAGAGGCAGGCAGATTTCTGT
AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTCAGGGCTATACAG
AGAGACCCTGTCTCGAATATATAAACAAAAACAATTAAAAGTTAGTGTGT
GGGGGTGTTATGTTTACCATTTCTTTTTTTTTTTN

NNNNNNNNNNNNNNAACCCAACNNAAGCAAAANACAAANATNNNNNAATN
NNNNNNNNNCCACCCCNNCCCCACCCACCNCCNCCCACNNNNCCGCACCG
CACCGGGNCANCGNNNNCGNCTCANNNNCGNCCCCCCAAAATNCCCTAAG
GGGAGCNTGAAAGCCCCCATGAGNNNNNNNGNNNCCGCCCGGGCCGTTCA
ACATTTAGGTGGACACTATAAAAAGGGATCTGCGGGAAATCATCCAGTGG
AAGACCTTCCCCCTTCCCTTTCTTTTTTCCCCCAAGGAAACCCTGGGGTG
GCCCGGAAACCCAAACCGGAAAACCAAGGTGGGCGTTTTAACCCCAAAAA
AGTCCGCGTCCCCAACATNNNNCACTGCGGGGANNNNNAAACAACTCTGC
ACAGATGGGCGGCGGGCGGCGAGGGTGGGGGGGCGGAAAAAAAAAGGTGG
GGGGTTTNNNTTAAACAAAAAAGACGNNNNNNNNNNAGAGCGAGACAAAG
ATATTGGCGGGGCGGAGAAGGGGGCGGGCGAGAGGGCGGGGAGAGGAGGG
CGGAGGGGGGGGGCGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGTCAAAA
AAAAAAAAAAAAAAATANANGGGGGATGCGGGGCGACCAAAAAAAAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNN
NNNNNTNNNNNTNTNNANNNNNTTNNNNTNTTTNTTNTNNTTNTTTTTTT
TTTTTTTTNTNNNTTTTTTTNNNNTTTTTTTTNTTTTTTTTTTNNNTTTT
TTTNNNNTTTTTTTTTNNNTNTTTATTTTTNTTTTTTNNNNNNANTTTTT
TNAATNTTTTTTNNTTTAAAAAAATAATAATAATAAAATAAGATAATGTC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_d01.b1 MSMg01no373_d01.b1 CHROMAT_FILE:
MSMg01no373_d01.b1 PHD_FILE: MSMg01no373_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:06 2005
         (618 letters)



>mm_chr9_78196887_78197904
          Length = 1018

 Score =  843 bits (436), Expect = 0.0
 Identities = 475/488 (97%), Gaps = 4/488 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccaggttttcgttccaagttttagttccaagttcccatggctggccaggtgtg 64
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccagggcttagttccaagttttagttccaagttcccatggctggccaggtgtg 264

                                                                       
Query: 65  cggcagaaaggccacgatgg-ctatgtgaccaacttcccttgagtgttggagatgtgtcc 123
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 265 cggcagaaaggccacgatgggc-atgtgaccaacttcccttgagtgttggagatgtgtcc 323

                                                                       
Query: 124 ctttgtgcaggtgtagaaaggacagttgagtgatttatcatgtgctactccaccagacta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttgtgcaggtgtagaaaggacagttgagtgatttatcatgtgctactccaccagacta 383

                                                                       
Query: 184 acaaatgtccaagctctttgttgcaattcctggactttatctgaaataaaaatttgatgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acaaatgtccaagctctttgttgcaattcctggactttatctgaaataaaaatttgatgt 443

                                                                       
Query: 244 gtccttcaaatgtgttctttaaaattacttgggcttcagaaaagtttcacggggctgaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtccttcaaatgtgttctttaaaattacttgggcttcagaaaagtttcacggggctgaga 503

                                                                       
Query: 304 gtgcagcttggtggtatagcctgctctgccatgctccctggagcctggggcagagcccta 363
           ||||||||||||||||||||||||||||||||||||||  |||||||||||||||  || 
Sbjct: 504 gtgcagcttggtggtatagcctgctctgccatgctcccaagagcctggggcagagttct- 562

                                                                       
Query: 364 t-catggaaaagacaagctcaaaggtatagactcccaaatactgttccccagtgtgaagg 422
           | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 563 tacatggaaaagacaagctcaaaggtatagacccccaaatactgttccccagtgtgaagg 622

                                                                       
Query: 423 ttaatgtagacaccaagacccctttgtcacaccgctctgaggctgtttctctttgtccct 482
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 623 ttaatgtagacaccaagacccctttgtcacaccactctgaggctgtttctctttgtccct 682

                   
Query: 483 taaaagtt 490
           ||||||||
Sbjct: 683 taaaagtt 690



 Score =  101 bits (52), Expect = 2e-25
 Identities = 82/94 (87%), Gaps = 7/94 (7%)
 Strand = Plus / Plus

                                                                       
Query: 531 cagcactc-gcgaggtagaggcaggcagatttctg--t---aggccagcctggtctacaa 584
           |||||||| | |||| |||||||||  ||||||||  |   |||||||||||||||||||
Sbjct: 68  cagcactctg-gaggcagaggcaggtggatttctgagttccaggccagcctggtctacaa 126

                                             
Query: 585 agtgagttccaggacagtcagggctatacagaga 618
           ||||||||||||||||| |||||||| |||||||
Sbjct: 127 agtgagttccaggacagccagggctacacagaga 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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