BAC Information

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BAC

Clone NameMSMg01-373D13
Chromosome9 (Build37)
Map Location 116,873,564 - 116,874,010
singlet/doubletsinglet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneLOC665840, LOC100039650, LOC100039681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373D13.T7 (MSMg01no373_d13.b1)MSMg01-373D13.TJ (MSMg01no373_d13.g1)
ACCAG479302AG479303
length715707
length of high quality
(start - end)
567 (46 - 612)449 (56 - 504)
definitionCHROMAT_FILE: MSMg01no373_d13.b1 PHD_FILE: MSMg01no373_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:08 2005CHROMAT_FILE: MSMg01no373_d13.g1 PHD_FILE: MSMg01no373_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATTTCAAGAGGATCCGCGGAATTCAAGCAGGTTACGAAGCAGGA
GCTGATGCAGAAGCCATGGAGGGATGTTCTTTATTGGCTTGCTTCCCCAG
GCTTGCTCAGCCTGCTTTCTTATAGAACCAAGACTACCAGCCCAGAGATG
GCACCACCCACAAGGGGACCCCCACCCCCATCAATAATTGAGAAAATGCC
TTACAGCATGGATCTCATGGAGGCATTTCCTAAACTGAAGCTCCTTTCTC
TGTGATAACTCCAACCTGTGTCAAGTTGACACAAAACTAGCCAGTACAGC
TCCAGCCTTATCTGGAAGTGAGTTTTTAGATTTGGTTGAGGTAGAACTGC
CTACCCTGGACATGGGTGGTAGCGTTCCAAAGGTTGGGGTCCTAGATTTA
AAGAGGAAAAGAAAAGGAGAAGCCAGTGAAGTAGCCAGAATTCCCTATTC
TCTGCTTCCTGAGTGTGGATGCAACAGGACCTGCTGCTTCAGGTTCTGGC
TCCCATGAATTCCCTACCACAATGGACTAGCTGTGCAGTCAGATTATGAG
CCAAACGAACCCTTCTTTCATGAACTTGCTTTTTGTTAGATACTTATTAT
AGCAGTGAGGAGAGTAATTAATGAAGCATTACATAACCAGTGAATAGATA
AATGAAGGAATAAATACCAGCTTGCACAGGAAAAGAAAGTCCTTGACTCC
TCTTGCAGAAACCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAAGTAAATGACTAAAACTCATTTCAGCGATTCAGAAGTATTTAT
TGGCCAACTACTAGGGCACGCTATAGACTTCTTTGTAGTTTTGAGCAAGA
AGTAGGAAAGTAGGGGAGACCAAGCTGAGAAGATATCCAAGCTTTGTGAA
AACAAGTAGACAATTCATCAAACATCCTATCCAAGAGGGCGCAGGCCCAG
GCAAGGCACCTCTGCACAGACATGGACATGCTGCCCCAGAACCCACAGCC
ACTGTTTGGAAGAAGCGCCCTGGCTGTGTGTGTTACATATCTCAGTCAGT
GCTGTGACCAAGTGCCCGACACAAGCAACTGAAAGGGAATGCTTATCCCG
GCTCTTGGTTCCATCATAGCGGGGAGGCATGGCAGCAAGAACAGGAGAAA
ACTGGTCACAGTACTGACAGTCAGCCAGAAAGCAGGTAGGAAGGGGGCTG
GTTTATAAACCCACAAGGCCACCCCAATGACTTGTTTCCTTTCCCACATC
GTATCCCTGAATTCCTTTCTTCCTTCAGCATGTAGAGGGTCGTTTCCCGA
TTGTGTCCTTTATTATCTCAATTTCCAGCTACTTGGAGATTTTTTTTAGT
GACGCCTCCGATCTCCCTATTGTGTCCTCGTTTCTGTTATCCTCTTCTCT
TTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_d13.g1 MSMg01no373_d13.g1 CHROMAT_FILE:
MSMg01no373_d13.g1 PHD_FILE: MSMg01no373_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:08 2005
         (449 letters)



>mm_chr9_116873364_116874207
          Length = 844

 Score =  687 bits (355), Expect = 0.0
 Identities = 426/453 (94%), Gaps = 10/453 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagtaaatgactaaaactcatttcagcgattcagaagtatttattggccaactactagg 60
           |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aaaggaaatgactaaaactcatttcagcgattcagaagtattttttggccaactactagg 260

                                                                       
Query: 61  gcacgctatagacttctttgtagttttgagcaagaagtaggaaagtaggggagaccaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacgctatagacttctttgtagttttgagcaagaagtaggaaagtaggggagaccaagc 320

                                                                       
Query: 121 tgagaagatatccaagctttgtgaaaacaagtagacaattcatcaaacatcctatccaag 180
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tgagaagagatccaagctttgtgaaaacaagtagacaattcataaaacatcctatccaag 380

                                                                       
Query: 181 agggcgcaggcccaggcaaggcacctctgcacagacatggacatgctgccccagaaccca 240
           | ||||||||||||||||     ||||||||||||||| |||||||||||||||||||||
Sbjct: 381 aaggcgcaggcccaggca-----cctctgcacagacatagacatgctgccccagaaccca 435

                                                                       
Query: 241 cagccactgtttggaagaagcgccctggctgtgtgtgt--tacatatctcagtcagtgct 298
           ||| |||||   ||||||||||||||||||||||||||  ||| ||||||||||||||||
Sbjct: 436 cagtcactggaaggaagaagcgccctggctgtgtgtgtgttacgtatctcagtcagtgct 495

                                                                       
Query: 299 gtgaccaagtgcccgacacaagcaactgaaagggaatg-cttatcccggctcttggttcc 357
           |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| 
Sbjct: 496 gtgaccaagtgccccacacaagcaactgaaagggaatggcttatcccggctcttagttct 555

                                                                       
Query: 358 atcatagcggggaggcatggcagcaagaacaggagaaaactggtcacagtact-gacagt 416
            |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 556 gtcatagcggggaggcatggcagcaagaacaggagaaaactggtcacagta-tcgacagt 614

                                            
Query: 417 cagccagaaagcaggtaggaagggggctggttt 449
           ||| |||| ||||||||||||||||||||||||
Sbjct: 615 caggcagagagcaggtaggaagggggctggttt 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 844
Length adjustment: 10
Effective length of query: 439
Effective length of database: 834
Effective search space:   366126
Effective search space used:   366126
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)