BAC Information

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BAC

Clone NameMSMg01-373H24
Chromosome9 (Build37)
Map Location 38,477,838 - 38,628,041
singlet/doubletdoublet
Overlap geneOlfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922
Upstream geneLOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917
Downstream geneOlfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373H24.T7 (MSMg01no373_h24.b1)MSMg01-373H24.TJ (MSMg01no373_h24.g1)
ACCAG479516AG479517
length704722
length of high quality
(start - end)		621 (47 - 667)644 (71 - 714)
definitionCHROMAT_FILE: MSMg01no373_h24.b1 PHD_FILE: MSMg01no373_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:28 2005CHROMAT_FILE: MSMg01no373_h24.g1 PHD_FILE: MSMg01no373_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,627,421 - 38,628,041)(38,477,838 - 38,478,481)
sequence
ACTCCTATAGTTCAGAGGATCCGCGGAATTCAGGGAGTGTAACTAATGTA
AATGACTTTTGTGTGCTAAGGTACTTCCTCCTGGAGAAAACTGGGAAACA
CAATAAGCTAACAAAACCTACAAATCTCAAGCTGTCCAGGAAAGTTATAA
GATTCACCAGGCCTTCCCTGAGGTTATATAAGTAGCAACTTATCTCTGGG
TAGGGGAAGCTCTCTTTAGGGAAGTTGTTCAGGAAGATTCAGCTAAATAG
ATTTGGTTAGTCATTTCTCATTTTGGAGTGAGCATTTCAATGAAGCAACT
GCCCTTGAATCACCCATGCCTTTAAAATACTTGCTCCTGTAAGTGTAAGT
ACCCTACTTTTTCCTCACACTGGTCATGAGGAGAATAAAGTCTTTCGTTT
TTGTCAGTGCAGCATTTTGGATGAAGAGGTGTTTTGTTTTTACATTGTTT
CAAGGAAAAACACACAACAGTTTTCTCTCTCATTTCATAAATGCACAGGC
TACTTTGCAGCTTTGACCTTCTCAACTTTCTCCACATATGAACACATCCA
AATATAACCACTCAGAAAACTGGTTTAGCTATTTGTTCCTTTCATAGATA
GCATTTGCTATTTATTTTGACCTATCTTCTTGGTGTTATTTACTTACATA
AGCATGTATTTACTTAGTCAGTGTCTGGATATGTAGCTCAGGCTGGTCTA
GTCT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCATCATAGATGCAATTAAGCCAGCATAAA
CTATACTGTTACCATCTTTTTACTGTATCTGAAAGACACCAGTCAGTGAG
GAATTGAAAATACTGAATAAAAATGATGATAATAAATAGTGGGAAGACCT
TCCAAGAGCTCCTCATACCAAAGCGGCTTATAGATTCAATGGAGCCATCA
TCAAAATTTCAACCAGTTCTCCACAAAAATTGAAAACCCATGAACACCAT
TCCCATATACATACTTACTTATTATAACTTAAATAAATGTTGGTTTGTGT
TTTGTGTAGAATTTATAACTATCCATGAACTGACCATAAACCAACTTTGG
GAGATTTGTCTAATTTACAAAAGGAGGTGACTTTAATAAAATAAAAATAT
AAATTCTGAAGTGTTGAAGATGATTTTGTGCTGGAATAGTAATCATTCCT
TTTAGATATGACTTGTTATGTAAAAATCAATAAGCACACCTTTGTCATAA
ATATGTGACTTGTCTCTGAGAAAAATGAACTATATATCTGANAACTGCAT
CAGGGTCTGAGAGATTAGTCCAGTGAGTAAAGCTGTTGCTGCTCAAGTGT
GAGGACTTTCAAGTGCTGCATGATTCGCACATGAGTCCCATACTCTCTTC
CCACTATATGATAATGATACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_h24.b1 MSMg01no373_h24.b1 CHROMAT_FILE:
MSMg01no373_h24.b1 PHD_FILE: MSMg01no373_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:28 2005
         (621 letters)



>mm_chr9_38627221_38628241
          Length = 1021

 Score = 1193 bits (617), Expect = 0.0
 Identities = 620/621 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaaatgacttttgtgtgctaaggtacttcctcctggagaaaactgggaaacacaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tgtaaatgacttttgtgtgctaaggtacttcctcctggagaaaactgggaaacacaataa 762

                                                                       
Query: 61  gctaacaaaacctacaaatctcaagctgtccaggaaagttataagattcaccaggccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gctaacaaaacctacaaatctcaagctgtccaggaaagttataagattcaccaggccttc 702

                                                                       
Query: 121 cctgaggttatataagtagcaacttatctctgggtaggggaagctctctttagggaagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 cctgaggttatataagtagcaacttatctctgggtaggggaagctctctttagggaagtt 642

                                                                       
Query: 181 gttcaggaagattcagctaaatagatttggttagtcatttctcattttggagtgagcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gttcaggaagattcagctaaatagatttggttagtcatttctcattttggagtgagcatt 582

                                                                       
Query: 241 tcaatgaagcaactgcccttgaatcacccatgcctttaaaatacttgctcctgtaagtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tcaatgaagcaactgcccttgaatcacccatgcctttaaaatacttgctcctgtaagtgt 522

                                                                       
Query: 301 aagtaccctactttttcctcacactggtcatgaggagaataaagtctttcgtttttgtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aagtaccctactttttcctcacactggtcatgaggagaataaagtctttcgtttttgtca 462

                                                                       
Query: 361 gtgcagcattttggatgaagaggtgttttgtttttacattgtttcaaggaaaaacacaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtgcagcattttggatgaagaggtgttttgtttttacattgtttcaaggaaaaacacaca 402

                                                                       
Query: 421 acagttttctctctcatttcataaatgcacaggctactttgcagctttgaccttctcaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acagttttctctctcatttcataaatgcacaggctactttgcagctttgaccttctcaac 342

                                                                       
Query: 481 tttctccacatatgaacacatccaaatataaccactcagaaaactggtttagctatttgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttctccacatatgaacacatccaaatataaccactcagaaaactggtttagctatttgt 282

                                                                       
Query: 541 tcctttcatagatagcatttgctatttattttgacctatcttcttggtgttatttactta 600
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcctttcatagatagcacttgctatttattttgacctatcttcttggtgttatttactta 222

                                
Query: 601 cataagcatgtatttacttag 621
           |||||||||||||||||||||
Sbjct: 221 cataagcatgtatttacttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_h24.g1 MSMg01no373_h24.g1 CHROMAT_FILE:
MSMg01no373_h24.g1 PHD_FILE: MSMg01no373_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:28 2005
         (644 letters)



>mm_chr9_38477638_38478681
          Length = 1044

 Score = 1224 bits (633), Expect = 0.0
 Identities = 641/644 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcatagatgcaattaagccagcataaactatactgttaccatctttttactgtatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcatagatgcaattaagccagcataaactatactgttaccatctttttactgtatct 260

                                                                       
Query: 61  gaaagacaccagtcagtgaggaattgaaaatactgaataaaaatgatgataataaatagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagacaccagtcagtgaggaattgaaaatactgaataaaaatgatgataataaatagt 320

                                                                       
Query: 121 gggaagaccttccaagagctcctcataccaaagcggcttatagattcaatggagccatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaagaccttccaagagctcctcataccaaagcggcttatagattcaatggagccatca 380

                                                                       
Query: 181 tcaaaatttcaaccagttctccacaaaaattgaaaacccatgaacaccattcccatatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaatttcaaccagttctccacaaaaattgaaaacccatgaacaccattcccatatac 440

                                                                       
Query: 241 atacttacttattataacttaaataaatgttggtttgtgttttgtgtagaatttataact 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacttacttaaaataacttaaataaatgttggtttgtgttttgtgtagaatttataact 500

                                                                       
Query: 301 atccatgaactgaccataaaccaactttgggagatttgtctaatttacaaaaggaggtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccatgaactgaccataaaccaactttgggagatttgtctaatttacaaaaggaggtga 560

                                                                       
Query: 361 ctttaataaaataaaaatataaattctgaagtgttgaagatgattttgtgctggaatagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttaataaaataaaaatataaattctgaagtgttgaagatgattttgtgctggaatagt 620

                                                                       
Query: 421 aatcattccttttagatatgacttgttatgtaaaaatcaataagcacacctttgtcataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatcattccttttagatatgacttgttatgtaaaaatcaataagcacacctttgtcataa 680

                                                                       
Query: 481 atatgtgacttgtctctgagaaaaatgaactatatatctganaactgcatcagggtctga 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 atatgtgacttgtctctgagaaaaatgaactatatatctgaaaactgcatcagggtctga 740

                                                                       
Query: 541 gagattagtccagtgagtaaagctgttgctgctcaagtgtgaggactttcaagtgctgca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagattagtccagtgagtaaagctgttgctgctcaagtgtgaggactttcaagtgctgca 800

                                                       
Query: 601 tgattcgcacatgagtcccatactctcttcccactatatgataa 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgattcgcacatgagtcccatactctcttcccactatatgataa 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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