Query= MSMg01no373_i06.b1 MSMg01no373_i06.b1 CHROMAT_FILE:
MSMg01no373_i06.b1 PHD_FILE: MSMg01no373_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:29 2005
(199 letters)
>mm_chr9_88367185_88367796
Length = 612
Score = 310 bits (160), Expect = 5e-89
Identities = 197/210 (93%), Gaps = 13/210 (6%)
Strand = Plus / Minus
Query: 3 atatgtaacctgttgac-tgattttgagtaccagtgaata-gcttga-atgttttag-tt 58
||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||
Sbjct: 412 atatgtaacctgttgacatgattttgagtaccagtgaataggcttgagatgttttagttt 353
Query: 59 a-aaaactccatggtt--acaagtccaatctaagattgtattattac-g-ttacttattt 113
| |||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 352 agaaaactccatggtttaacaagtccaatctaagattgtattattacagtttacttattt 293
Query: 114 atatag-cttaacatgtatcatgtattaataaacagtatgtattttaagtcttaatg-ag 171
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 292 atatagtcttaacatgtatcatgtattaataaacagtatgtattttaagtcttaatgtag 233
Query: 172 agattt-acgtacatgacc-tatagccttt 199
|||||| |||||||||||| ||||||||||
Sbjct: 232 agatttaacgtacatgaccatatagccttt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 612
Length adjustment: 8
Effective length of query: 191
Effective length of database: 604
Effective search space: 115364
Effective search space used: 115364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no373_i06.g1 MSMg01no373_i06.g1 CHROMAT_FILE:
MSMg01no373_i06.g1 PHD_FILE: MSMg01no373_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:29 2005
(221 letters)
>mm_chr9_88177533_88178153
Length = 621
Score = 333 bits (172), Expect = 6e-96
Identities = 213/229 (93%), Gaps = 8/229 (3%)
Strand = Plus / Plus
Query: 1 gtcataagtgggactgatagcataatgtagtcacgttgaactccagcttggacagtccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcataagtgggactgatagcataatgtagtcacgttgaactccagcttggacagtccat 260
Query: 61 gtctcgtgagtcatgagtcccatgatgataactgattccaggaagcagtgtatcagtcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctcgtgagtcatgagtcccatgatgataactgattccaggaagcagtgtatcagtcta 320
Query: 121 gacatctcactcttttttt---gttgttgttgttgttg--gttttt-tt-ttttttg-ag 172
|||| |||||||||||||| |||||||||||||||| ||| || || ||||||| ||
Sbjct: 321 gacacctcactcttttttttttgttgttgttgttgttgttgttgttgttgttttttggag 380
Query: 173 gggtttgtttcaaganagggtttctctgtatagtcttagctgtcctgga 221
||| ||||||||| ||||||||||||||||| | |||||||||||||
Sbjct: 381 gggggggtttcaagacagggtttctctgtatagccctagctgtcctgga 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space: 129744
Effective search space used: 129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
