Query= MSMg01no373_k10.b1 MSMg01no373_k10.b1 CHROMAT_FILE:
MSMg01no373_k10.b1 PHD_FILE: MSMg01no373_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:39 2005
(554 letters)
>mm_chr9_105718318_105719270
Length = 953
Score = 1038 bits (537), Expect = 0.0
Identities = 546/549 (99%), Gaps = 1/549 (0%)
Strand = Plus / Minus
Query: 6 ggaattccttgtttccgtttcttgagttttgggattgcaagcatgctattgcctgttcag 65
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ggaattccttgtttctgtttcttgagttttgggattgcaagcatgctattgcctgttcag 694
Query: 66 cttttacttgggtctgaagccacgcccatctacgtagcaagcattttatccacagaacca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cttttacttgggtctgaagccacgcccatctacgtagcaagcattttatccacagaacca 634
Query: 126 actccccatactatatactagcctctagtatatagtatattctattttttatggagagag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 actccccatactatatactagcctctagtatatagtatattctattttttatggagagag 574
Query: 186 cttctgtagatgtagcctctgctgctgtcaccacagtcagccagagcagcaggggttggc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cttctgtagatgtagcctctgctgctgtcaccacagtcagccagagcagcaggggttggc 514
Query: 246 tgtgtagcacactggatctaccagaaggttctctatgatgtcccctccctggtacctgct 305
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 513 tgtgtagcacactggatctaccagaagg-cctctatgatgtcccctccctggtacctgct 455
Query: 306 gaacttcctgggaaaagacagtttgctgagatgtagaggttcagtgagaagggatggcta 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gaacttcctgggaaaagacagtttgctgagatgtagaggttcagtgagaagggatggcta 395
Query: 366 ggaccacccttaggagaaggagctggggtcttcaggtcttcagaaaggagatcttcgagt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggaccacccttaggagaaggagctggggtcttcaggtcttcagaaaggagatcttcgagt 335
Query: 426 cttctacccatggagttttctgacagtgaacgcagagcctccaaagtcctatatggttca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cttctacccatggagttttctgacagtgaacgcagagcctccaaagtcctatatggttca 275
Query: 486 gtattctccctcactcctaaataaagaaaactaggtcaactgatgatttatgacaggtat 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtattctccctcactcctaaataaagaaaactaggtcaactgatgatttatgacaggtat 215
Query: 546 ataagggtc 554
|||||||||
Sbjct: 214 ataagggtc 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 953
Length adjustment: 10
Effective length of query: 544
Effective length of database: 943
Effective search space: 512992
Effective search space used: 512992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_k10.g1 MSMg01no373_k10.g1 CHROMAT_FILE:
MSMg01no373_k10.g1 PHD_FILE: MSMg01no373_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:39 2005
(244 letters)
>mm_chr9_105538158_105538801
Length = 644
Score = 472 bits (244), Expect = e-138
Identities = 244/244 (100%)
Strand = Plus / Plus
Query: 1 aagaaatccgcctgcctctgcctcccaagttctgggattaaaagcgtgcgccaccaccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaatccgcctgcctctgcctcccaagttctgggattaaaagcgtgcgccaccaccgc 260
Query: 61 ccggtttaaagttgcctatttaagagagtttttcccaggctgtaattcacaagcacaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccggtttaaagttgcctatttaagagagtttttcccaggctgtaattcacaagcacaggc 320
Query: 121 tcctgtgatcttgcagccccacccccacccccatccagggggctgtgacgttcactgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgtgatcttgcagccccacccccacccccatccagggggctgtgacgttcactgcat 380
Query: 181 cgcagctgaaggggaaaaggaaagtggagaccattcacctcttaatgacattgaccttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgcagctgaaggggaaaaggaaagtggagaccattcacctcttaatgacattgaccttag 440
Query: 241 agtt 244
||||
Sbjct: 441 agtt 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
