BAC Information

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BAC

Clone NameMSMg01-373L05
Chromosome9 (Build37)
Map Location 115,637,768 - 115,638,260
singlet/doubletsinglet
Overlap genenone
Upstream geneCmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
Downstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik, Rbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373L05.T7 (MSMg01no373_l05.b1)MSMg01-373L05.TJ (MSMg01no373_l05.g1)
ACCAG479668AG479669
length725747
length of high quality
(start - end)		488 (6 - 493)413 (58 - 470)
definitionCHROMAT_FILE: MSMg01no373_l05.b1 PHD_FILE: MSMg01no373_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:43 2005CHROMAT_FILE: MSMg01no373_l05.g1 PHD_FILE: MSMg01no373_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAGATCCGCGGAATTCCTCGTTCTTTGCTCAGAGATGCCAACAGTGAAT
TTGGGTAAGATTTGGGACTTGAAAGTGAGGCAGATGCTGTTCTGATCTGA
CAAGGCGTGTTGGGAGGTAATACTGAGATGCAGGTGTCTTCTCTTGCCCT
TCATCCATGCAACTTTCCTTCCTAATTTGCCTTTCTCGGTTGGCAGCGCT
TGGCTTCCAGGCTTACCACTTCTGTGACCTCTCATCAGACATGGGCACAG
ACAGGCCATTACTCCCAGGGACAGCTCCATCAGCACCTCTGTGCTTCCCC
TCCAATGGCTGAAGTGACCAGCAGCATCAGAGTCCCCTGACATCGTGCTG
CACTGACCCACTGGAGGCCAACCTCCTAAGCACTGCATCATGTTTAGTCT
CCAATACTCAAATGATGAAGTCTCAGTGCTAGGACCTCAGAGTGACACTG
GATTGGAGACTTGTGAATGGTTCACTGTGTGACTATCTGAAAGCTATCTA
GAAATCAAAGATGCAAGTTCTAAAAAAAAGCCTTTCTGCCAGCACCCTAA
ACTGGCACAAAGTTCATAACCAATTTTGAACAACAGTCCTGTTGGAAAAG
CTTAACACTCTCTTTGATTGTGGCCTTTGTTATCTCCAAAACCAAAATTT
TTTCATTTCCCCCCTCAAATTATTTAATGTATCTCAGGTTTTGTTTTTTT
ACCCATATTTTTTGGGTTGAAAGGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCATGAACTGACTTCACCGACTGCACAAACCAACGAGCAGAACC
CAGGGGAACTGGGCGGATCTGCACAAACTCAACTGTACTCAACTGAACTA
CACTCAACCAAACTCAACTCTCTCCCTGCACTGCTCTTAACTAGTCTCTC
TTTCCTGTTCACTCTCATGAGAGTTAGGCACCTCCTATCTCTGACTCATT
CTATCAAATCTTTCTCTGTTTCATCACTTTGTTCACCCATCAATTAGATG
TCATTGTTTGGGATTAAAGGTATGTCCTAAAGGAAATGTCAAGTGTCTGT
ATTCCAGCCAGAGGGATTAAAGGTATGTTATTCCAGCTGATGACAAAGAC
CTACAACGTCTTTGGATGTGATCCCTTGCCAGAGCAGCTATGTACCTGGA
TTAAAATTCCTTTACCGAAATTAACTAGGAAGAGGTGGCGAAAGAAAGAG
TAAGGCAAGGGTAGCAGATGAGATATAAATGTACTGTCTTATATTTCCCT
TTCCATTTCCCCTTTACTTTTCCCCTCCCCTTTTTAAGCTTTTACATTAT
ACTTTTATATCATCTATCTATCTCTTTTTAAATTCTTATTAATATAATTA
CCATAATTTCACCCTATTCTTATCCTTATTTCTTATTCCTCCNCTCTTTT
CTTTAATCTATTTACCCATCAATAAGATACATATCTTTTTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_l05.b1 MSMg01no373_l05.b1 CHROMAT_FILE:
MSMg01no373_l05.b1 PHD_FILE: MSMg01no373_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:43 2005
         (488 letters)



>mm_chr9_115637443_115638330
          Length = 888

 Score =  853 bits (441), Expect = 0.0
 Identities = 475/493 (96%), Gaps = 11/493 (2%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcctcgttctttgctcagagatgccaacagtgaatttgggtaagatttgggacttg 66
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gaattcctcgttcttgggtcagagatgccaacagtgaatttgggtaagatttgggacttg 759

                                                                       
Query: 67  aaagtgaggcagatgctgttctgatctgacaaggcgtgttgggaggtaatactgagatg- 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 758 aaagtgaggcagatgctgttctgatctgacaaggcgtgttgggaggtaatactgagatgc 699

                                                                       
Query: 126 ----------caggtgtcttctcttgcccttcatccatgcaactttccttcctaatttgc 175
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aggtgggctccaggtgtcttctcttgcccttcatccatgcaactttccttcctaatttgc 639

                                                                       
Query: 176 ctttctcggttggcagcgcttggcttccaggcttaccacttctgtgacctctcatcagac 235
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ctttctcggtgggcagcgcttggcttccaggcttaccacttctgtgacctctcatcagac 579

                                                                       
Query: 236 atgggcacagacaggccattactcccagggacagctccatcagcacctctgtgcttcccc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atgggcacagacaggccattactcccagggacagctccatcagcacctctgtgcttcccc 519

                                                                       
Query: 296 tccaatggctgaagtgaccagcagcatcagagtcccctgacatcgtgctgcactgaccca 355
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 518 tccaatggctgaagtgaccagcagcatcagagtcccctgacatcctgctgcactgaccca 459

                                                                       
Query: 356 ctggaggccaacctcctaagcactgcatcatgtttagtctccaatactcaaatgatgaag 415
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctggaggccaacctcctaagcattgcatcatgtttagtctccaatactcaaatgatgaag 399

                                                                       
Query: 416 tctcagtgctaggacctcagagtgacactggattggagacttgtgaatggttcactgtgt 475
           |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 398 tctcagtgctagaacctcagagtgacactgtattggagacttgtgaatggttcactgtgt 339

                        
Query: 476 gactatctgaaag 488
           |||||||||||||
Sbjct: 338 gactatctgaaag 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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