BAC Information

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BAC

Clone NameMSMg01-373M12
Chromosome9 (Build37)
Map Location 8,255,712 - 8,255,960
singlet/doubletsinglet
Overlap genenone
Upstream geneMmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik
Downstream geneTrpc6, Pgr, 9030420J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373M12.T7 (MSMg01no373_m12.b1)MSMg01-373M12.TJ (MSMg01no373_m12.g1)
ACCAG479730AG479731
length719758
length of high quality
(start - end)
249 (47 - 295)370 (78 - 447)
definitionCHROMAT_FILE: MSMg01no373_m12.b1 PHD_FILE: MSMg01no373_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:49 2005CHROMAT_FILE: MSMg01no373_m12.g1 PHD_FILE: MSMg01no373_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCACTTTTGCGAGAGGATCCGCGGAATTCCAGGCCTTTCAGAGGTTTT
CTCAGAAAATAGTACACAGAACCTGAGGAGTGACAGCAGAGGTTATCCTC
TGACCAACACATGTATATGCACACACCTGCACATCCATCTACAGAGAGAG
AAAGAGAGGTTTTATAAAACCTGCTAAGGTTTTGTTCCAAATGTCAAGAG
TAGATGGGCTTTATCCTAAAAATAACATTGCCAATCTTTACTGTGCTGTT
TGTCTTTTTCCTTCTTTCCTGTAAAATCTTCGTGATGTTTGCCACTATTT
TTGACCCCATAAACACTACATAAAAGAAATACATCTCATATGGTATTACT
TAGGAAGAATGTAGGCGATAATATTTCTGGAGAACAATTTGGCTGTGTAA
ATCTAAAGCATCTAAAAACTACAATCTCTCTGACTCCAACAGTCCATTTC
TTGGAATTTATCCTCAGAGAAACAAGCATGACTATGTCTTCAAGCACAAT
GGCAACATTAATATTCATCAAAGTAAGATTTATTTTAAAGCATTATAAAT
CATGTGTAATAAAATAATGTTTTTCAATCTGTGACACATTAAAACTGATC
ACAAATATAGAATATTTTAATTAGCATAAAAGATCTCTAGAATATAATAC
TGTATTTTGGAAAGCAAGTTTAAAGCAGGACATTTAANATGATCATTTTC
TGGCCTTCCAGTTTTCACC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGAACCAGAAAGGAGAATATA
ACCCACAGAATCAACCAAGCAGGGCTTATAGGGACCCACAGAGACTGAAG
TGGTAAACACAGACCCTGTATGTGTCTGAGCTAGGCCATACGTGTTATGG
TTGTGTTGCTTGGTGTTCTTGTGGGACTCCATCAGTGGGAGTGGGGAGTA
TCTCTGACTCTTTTGTCTGAACTTGGGGCCCTTATATTTCTACTGGGTCA
CCTGGCCAGTCTTGATATAATATTTTGTGCCTAGTCTTATTGTAAAATGC
TCTACCATGTTTGTTTTCTTTTGTATTGTCTTATCTTGTTTTGTTTTGCT
GGGTTTTTTTTTTGTTTGCTTGTTTTTGAAGAGAAGTGAAGGAGGAGTGG
ATCTGTGGGAGATTTNTTTTTTTTTTTTCCCCCTTCTCCCTCTATTCTTT
TCCTCCCTCTTCCCTCCTTACCCTCTTTGTTGTTTTCATTTCATCCTTTT
TCCTTTTTTCCCTCTTCCCCCTCTGTTTCTTCTTATTTTTTTTACCTTTT
TTGTATTCCTTCACCGCCTTTATATTTTCCTATTTTCCTTTTTTTCTCCC
CTTTATCTTCTTTTTTTTTTCTTTTTTTTCTTCTTTTCCCTCTCTTTTTC
CTGTATTTTTTTTTTTTTTCCCTTTTTCGCTGCNCCCCTTTTCTTCTCTT
CTCTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_m12.b1 MSMg01no373_m12.b1 CHROMAT_FILE:
MSMg01no373_m12.b1 PHD_FILE: MSMg01no373_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:49 2005
         (249 letters)



>mm_chr9_8255512_8256160
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctcagaaaatagtacacagaacctgaggagtgacagcagaggttatcctctgacca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ttttctcagaaaatagtacacagaacctgaggagtgacagcaggggttatcctctgacca 260

                                                                       
Query: 61  acacatgtatatgcacacacctgcacatccatctacagagagagaaagagaggttttata 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 acacatgtatatgcacacacctgcacattcatctacagagagagaaagagaggttttata 320

                                                                       
Query: 121 aaacctgctaaggttttgttccaaatgtcaagagtagatgggctttatcctaaaaataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacctgctaaggttttgttccaaatgtcaagagtagatgggctttatcctaaaaataac 380

                                                                       
Query: 181 attgccaatctttactgtgctgtttgtctttttccttctttcctgtaaaatcttcgtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgccaatctttactgtgctgtttgtctttttccttctttcctgtaaaatcttcgtgat 440

                    
Query: 241 gtttgccac 249
           |||||||||
Sbjct: 441 gtttgccac 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)