Query= MSMg01no373_n16.b1 MSMg01no373_n16.b1 CHROMAT_FILE:
MSMg01no373_n16.b1 PHD_FILE: MSMg01no373_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:54 2005
(286 letters)
>mm_chr9_112496177_112496862
Length = 686
Score = 480 bits (248), Expect = e-140
Identities = 280/294 (95%), Gaps = 8/294 (2%)
Strand = Plus / Minus
Query: 1 acacctgggttttcattcttttcaatatgggttcttgggctcaaatccaggtccccatgt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 acacctggattttcattcttttcaatatgggttcttgggctcaaatccaggtccccatgt 470
Query: 61 atccaaataagcactttaccaactgagagatctctccagtggctgggttcagtagtttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atccaaataagcactttaccaactgagagatctctccagtggctgggttcagtagtttaa 410
Query: 121 gctaacgtttggaaggaccagaagctttgtgattggcactggagatgggagacagtgact 180
|||||| ||||||||||||| |||||||||| |||||||||| |||||||||||||||||
Sbjct: 409 gctaacatttggaaggaccaaaagctttgtgtttggcactggggatgggagacagtgact 350
Query: 181 ttgcacataggccccctgccccctcttgggactgctagtatgacacagattttagtttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttgcacataggccccctgccccctcttgggactgctagtatgacacagattttagtttag 290
Query: 241 tttagtt--gtttattttagtttagtttagtt--g----gttggttggtttgtt 286
||||||| ||||| ||||||||||||||||| | |||||||||||||||
Sbjct: 289 tttagtttagtttagtttagtttagtttagtttagtttagttggttggtttgtt 236
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no373_n16.g1 MSMg01no373_n16.g1 CHROMAT_FILE:
MSMg01no373_n16.g1 PHD_FILE: MSMg01no373_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:54 2005
(586 letters)
>mm_chr9_112328678_112329663
Length = 986
Score = 1006 bits (520), Expect = 0.0
Identities = 569/590 (96%), Gaps = 8/590 (1%)
Strand = Plus / Plus
Query: 1 ccattggaagatgaagaattttccttgtggctctcagctgggcaccaagcaagtcttaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 193 ccattggaagatgaagaattttccttgtggctctcagctgggcaccaagcaaatcttaag 252
Query: 61 aacatgaagcttttaagccaatgaacatatgaattgtacaaatggaaatgtatgacaatt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cacatgaagcttttaagccaatgaacatatgaattgtacaaatggaaatgtatgacaatt 312
Query: 121 aaagctggtagtatatgcccaggaatattttaaaaattacttatctcctatctcttcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaagctggtagtatatgcccaggaatattttaaaaattacttatctcctatctcttcaaa 372
Query: 181 tctaactccagaaacaaactttttttt--------aaacagaagagggagactggaacta 232
||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 373 tctaactccagaaacaagcttttttttttttttttaaacagaagagggagactggaacta 432
Query: 233 atacttttcaggtttgagtagagattttaagagatgaacatcatggaaatgaagatacta 292
|||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 433 atacctttcaggtttgagtagagattttaagagatgaacaacattgaaatgaagatacta 492
Query: 293 gaagctggtcaaggaatctatgtttttcatgttgtttgttcccaagaggaaattcaggta 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 493 gaagctggtcaaggaatctatgtttttcatgttgtttgttcccaagaggaaattcagata 552
Query: 353 gtattaaggaatggtaatgggctgtataggaggatgccagtgatctcacagaccatattg 412
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 553 gtattaaggaatggtaatgggctgtataggaggaggccagtgatctcacagaccatattg 612
Query: 413 tgttttgttagttcaaaacatgggtggatgtcatatatgagcatttcaaaaacatggatg 472
| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 613 tcttttgttagttcaaaacatgggtagatgtcatatatgagcatttcataaacatggatg 672
Query: 473 gacaagcttatgtctttccatgatgggaaaaatttacaacctgtcaactctttcccttga 532
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 673 gacaagcttatgtctttccatgatgggaaaaatttacaacctgtcaactatttcccttga 732
Query: 533 taggcaactgaatccaaccctaatgcttttattccagtgttaactattaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 taggcaactgaatccaaccctaatgcttttattccagtgttaactattaa 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
