BAC Information

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BAC

Clone NameMSMg01-374G09
Chromosome9 (Build37)
Map Location 109,998,713 - 109,999,053
singlet/doubletsinglet
Overlap geneDhx30
Upstream geneEG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540
Downstream geneSmarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374G09.T7 (MSMg01no374_g09.b1)MSMg01-374G09.TJ (MSMg01no374_g09.g1)
ACCAG480204AG480205
length898775
length of high quality
(start - end)
279 (39 - 317)340 (64 - 403)
definitionCHROMAT_FILE: MSMg01no374_g09.b1 PHD_FILE: MSMg01no374_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:37 2005CHROMAT_FILE: MSMg01no374_g09.g1 PHD_FILE: MSMg01no374_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCGGA
ATTCTTGGTCTTTCCGGTCATTTGGCATAACCTATTTTTTCCTTCAGGAA
TAGAATCACCTTGAGAGAATATAGGAGAGCTCTGAGTCATTTTTTTTTAA
TAGGAAGAATGTTTAGTTGGGCTAGTTAGTATTGTTTTGGGTGGCAGGTA
AGTGAATTATGGGCTTAAGGGAGGAGGTTCAGGTAAAGAGGACCTAGTAT
GAGGTGTGTGTGTGTGTGTGTGCATGTATGTGAGAGAGAAGGGAAGTAGA
GAGGAGAGGAGAGGAGAGTTTTTTTTTTTTTCTTCCCCCCCTCCTTTCTT
TCTCCCTCTCTTTTTTCCCTCCCTCCTTTCTCTTCTCTCTTCTTTTTTCC
TTCTCCTTTCTTTTCTTTTGTCCCCCCCTCTGTCTCCTTCCTCTTTCTCT
CTTCTTCTCCTTCTCCTCTCCTCTCCCTCTCTCCCTTTCTTCCTTTTTCC
TCTCTTCTCTTTCTCTCATTTTTTTTTAATCCAATTTTCCTTCCCTCTTT
CCCCTCTTCTTCTCCTTTCTTCCTCCTCTTCCTTTCCTCTTACTCATTTT
TTCTTTTCTTTCCCTCTTTCTCTTCCATCCTACTTTTGTTCTCTTACCCA
CTCACCCATTCCTCCTCTATCCTCCTCCCTTTCCTCATCTCTCTATCTTC
CCCTCCCCCTCCTTCCTCCCCCCCGCTCCCTTTTCACTTTTTATCCCCCC
CCCTTCCTTTCCTTTATATTCCCTTACTGTAGCCTTTTACCTTTCTTCGT
CCTTTTTTCCTTTCCCTCTCTTCTCTTTCTTTTCTTCTTCCATCTCTCCT
TTTCCCTTCTTCTCTTTCTTCTTGTTTTCTCTCCTTTTCTCATTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCCATGTTTATTTGGCAAGCTATTTACTGACAGAGC
TATCTGACTTCCTGGCCTATGTCTTATTGTAAAATTAAAAACAAAAAGCA
AAAAAAACCACAAACAACAACAACAACTTTTTTTTTTTCCCTCAGATGTG
GTCTTTCTGTACCCTGGCTTGTCTGCAATTCACTATTGTTGGGCAAGCTG
TGTGCCTTCGAGAGTGCTGAGACTTTTATCCTGAGTATTTTAGGATTAAA
GGTGTGGCCATGGCTGGGTGTGGTGGCGCACTCCTTTAATCCCAGCACTC
GGGAGGCAGAGGCAGGTGGATTTCTGATTTCGAGGCCAGCCTGGTCTACA
AAGTGAGTGGCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAA
AACAAAACCCATAAAAACAAACCTAACAAACCAACAAACTAAAAAGGTGT
GGCCCACATCACTGAACCTAGAGAAAAAATTTTTAAACTTTCTTTTAAAA
GATTTATTTGGCCAATTCATGGAAATGGAGAACCTAAAGTTGTTCTTCAA
AACCCCTTAAAAAGTCCTTATAAACATATCGCCACAATAATCAAATTTTC
CATTAGTTTCACTTACTGAAATCATATACCACCTATTAATTTACAAATTC
TATATATAATCTTTACACAGCCTCGTATTATTTTATTCCTTGAATAATTA
CATTTCCTTACCTACTTCTCAATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_g09.g1 MSMg01no374_g09.g1 CHROMAT_FILE:
MSMg01no374_g09.g1 PHD_FILE: MSMg01no374_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:37 2005
         (340 letters)



>mm_chr9_109998604_109999344
          Length = 741

 Score =  621 bits (321), Expect = 0.0
 Identities = 336/343 (97%), Gaps = 5/343 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccatgtttatttggcaagctatttactgacagagctatctgacttcctggcctatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttccatgtttatttggcaagctatttactgacagagctatctgacttcctggcctatgtc 391

                                                                       
Query: 61  ttattgtaaaattaaaaacaaaaagcaaaaaaaaccaca---aacaacaacaacaacttt 117
           ||||||||||||||||||||||||||||||||| |||||   |||||||||||||||  |
Sbjct: 390 ttattgtaaaattaaaaacaaaaagcaaaaaaacccacaaacaacaacaacaacaac--t 333

                                                                       
Query: 118 ttttttttccctcagatgtggtctttctgtaccctggcttgtctgcaattcactattgtt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttttttttccctcagatgtggtctttctgtaccctggcttgtctgcaattcactattgtt 273

                                                                       
Query: 178 gggcaagctgtgtgccttcgagagtgctgagacttttatcctgagtattttaggattaaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gggcaagctgtgtgccttcgagagtgctgagacttttatcctgagtattttaggattaaa 213

                                                                       
Query: 238 ggtgtggccatggctgggtgtggtggcgcactcctttaatcccagcactcgggaggcaga 297
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ggtgtggccatggctggatgtggtggcgcactcctttaatcccagcactcgggaggcaga 153

                                                      
Query: 298 ggcaggtggatttctgatttcgaggccagcctggtctacaaag 340
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ggcaggtggatttctgatttcgaggccagcctggtctacaaag 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 741
Length adjustment: 9
Effective length of query: 331
Effective length of database: 732
Effective search space:   242292
Effective search space used:   242292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)